Atri017889.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000097.1:291788-300682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00065 0.038 14.6 1.0 1 23 327 350 327 350 0.96 2 13 0.012 0.71 10.6 0.2 2 21 419 438 418 439 0.93 3 13 1.5 86 4.0 0.7 1 22 685 705 685 705 0.86 4 13 0.25 15 6.4 4.6 1 23 719 741 719 741 0.97 5 13 0.0088 0.52 11.0 1.0 2 23 747 768 746 768 0.89 6 13 4 2.3e+02 2.7 0.2 1 23 790 811 790 811 0.84 7 13 0.68 40 5.1 6.4 2 23 858 879 857 879 0.95 8 13 0.041 2.4 8.9 0.3 1 23 894 916 894 916 0.97 9 13 1.9e-07 1.1e-05 25.7 2.3 1 23 922 944 922 944 0.98 10 13 0.00033 0.02 15.5 0.9 1 23 950 972 950 972 0.98 11 13 0.067 3.9 8.2 0.6 3 23 980 1001 979 1001 0.96 12 13 0.16 9.2 7.1 0.2 1 20 1008 1027 1008 1029 0.97 13 13 0.00062 0.037 14.6 0.2 3 23 1040 1061 1039 1061 0.95
Sequence Information
- Coding Sequence
- ATGTCGGATATTGCAAGAAAAAGGTCTAGAAAAGCTAAGCTAGTGCCTCGAAAGTGTAGTGCTGACTCCGGAGATGATTATAATACAGAGACTTCACAGGTTCCAGTCCAAGACGCGTCTAGAAAGAAAATTAAGAAAAATATAGTTATTACAACTGATAGCAAACATTTAAACTGCGTTACATTATGCGGAGAGGCGTCTACGTTAGACCCAATATCGGATGAGATTCCAGTCAACATAATTACTGTGAAAAAGATTAAAAAAGAAATCAATACCGAAGACTCTTCGGGAGCATGTCCTGAGCCATGCCAAGATGCATCTACAACAAACATAATCGAAAGAGGTCAGGGAACACAACCGTTGACACCGGCCCACTTCCCCCTCCCAATAACCTTTGACATAAAAGTGGAGGTAGAGAAATGTGATGAGAACTTACCGCAAGAGATGGAGGAAGTTAAGGATGAGTTTCCAAAAGCTATTGACAAAACCACGTTCTGGGACTGTTGTGGTTTGATACAGTTTACGTTGACAAATGAAAGAATACTCGATGCTACAGCTAGGGTTTTAGAAAAATCTACATCGGTCGCTGATAAAATCATGGATATTGCAGTCAGAAATACAATAGGACATCAGGAGCCGGGAGTCAGTTATTATTCGCGATATGAAGCGAAAATTCAATCGGTATTAAGTGATTGGATACTGTGGAAGATGAAGCATTTCTTGCGAGACGCCCCCATGCTATACAAATGCCATATATGCGAGGTGTGCTGGTGGAATCTCCAAGAGTTCAGAGATCATGTTGAGCAACATGACCACATAGTTATCAGTATGGAATCGAAATTACGTCACGAGACGAATATAATTGCGTACCGAAAATTCTACCCTAGTGTCGTGGAGATTGAGCCGGAAGGAAACTGTAGACAGTGCGGGAAAGATTACGCATACCATAAGAAAAGCCGTCATGTCTCACAGGAATACTATTGCTGCCCGGACTGTGGGGCTCAGTTTTTTACATGCACCAGCCTAGCTGCTCATATAGCAATCACGCACAAGAAAGTTGACCATATAAAATGTATTGTATGTCCAAATTTAGTGGAACCAGCAGAATTGACTGCCCATTTACAGACGGTACATGCAGTGCGCTCAGATTTGCCTATAATAACTAAACACTCTTTATACAAAAGTTGTGTGGTGTGCTTGGGACGGTACATCAATTTCAACCAACACGTGTGTGGTACGAAGGGATTCCACATTCAATGCCAGTATTGCTTCAGGGGTTTCACATCGTCGTATTTGGCTAATTCTCATATGGAATCGTCTCGGAATATGTTTCAGTGTGAGATCTGTGATGCATGGTTCAATTATACTTGTACAAGATACGAGCATATTCTGTTGAAACATACGGATAATTATACGTTGGTGAACAAGTGTGTGTTGTGCGATGAATACAATGTGTTTATCAGTTTAAACGGTGGGCTGCTGCATATGGAGACGGTGCATCCGGATAGGAAAACTAAACAGAAAAGTTATTTTGTAAAAGTGATAGTGCCAAAACTCTGCTTACACCCTTGTTTCGATGACTCTTATACTGAAGAGGCCAATGAAAGTGAAAAACTGCCCATAAAAAGTGAATCAGGTGAAGCAAAAGATCTTCCAGAGGAAATTCCAGAAGAATTGGTAGAAACCTTAATCAAAGAAGAACCTAATGAAGAATTAGAAATAGAAGAAAATTTTATAGAGAACAACTTTCTCCACGACCTTAATGTTAAAGAAGAATACGAAGAATCCGATTGTGATCTAGAAGAATATGAGGATGATATCATCAAACTTGACGTTCTTCATAGTCCTAAAGAAGTGCAGGACACTCAAGGTGGTGAGGAATTCTTAGAAGGATCCGAGAACCAATCCATGGATACCACCGACCACACAGAAAACTCCCAAGAATCGATAGACCAAGAATCTAGTGAACCAGAATCGAGTGCCCAAGAATCGAGCGACGACTCGTTTATGAAGCGACCGAGAAGAATTCCCAAGCATGGTAAACGGAGATTTTATTCTTGTACTATCTGTGGATTTCGGGCGTACCACAGAGAATTTAAAATACACATCAATACTAAATGCAGAAGATACTCAAATCGCATTAAAAGTTCCACCTTCCATTGTTCTCGGTGCTCACAAGAGTTCCGCACTCTACGAAAGTATTTGGCACATCTCACGAAGCATGGATACAAGAATCTAACATGTCCACATTGCTCGAAGAGTTTCAATACCTTCTCCAAGATGGCCCCACACATCCTAGGCCACGTGAAGCAGGCCTTCGTAAGAGTCAAGTCGATAACCGTTGAGGATACGAGCAAGGCACCGGAGTATCAATGTAAGCAGTGTAATTCAGCAGTGGACGTGTCGGAGTTCTTTGACCACTGGGAAGTCCATAGCAGTGCGGCCGGCAGGGTTCAGGAGCCCCTCGCGTCGATCAGATATCTTGGGAATAAGAAGGTGCAAGATAGGCAAAAGAAAATACCTGAAAAGAATATACAGCTGTTGATTGATCAGATACAAATTCGCTCGAAGCAGTGTAACTACTGCCTCCGGTCGTTCAATAGACATAATGATTGCAAGCGACATCTCATTGAACATCTCCTAGTGGATGCCTATGACCAGAAAATGGTCTACCAAGGCTTCCGGTGTCAAATATGTGGCACACAGTTGCCCGCAGTGGAAAAATACAAGCAGCACATGAGAGACCATGCCAATTTGCCAGTGTACCGTTGTGATATATGTGATAGAACATTCAGTGATTCGAGTAATTTTACTAAACATAAAAAAGTGCATAACTTCAAGTCTATATACGTGTGTGATCTGTGTTCTAAGAAGTTTCAATCGAAACTTGGATTGATGAAGCATATTAAGCTACATGAGAAGACGGTGCCCATCCTGTGTCAACTCTGCAACAAACTATACTACTTCGAGTCAACATACAAACGTCACGTAAGAGCTGCCCATGACAAAGTTCCCATAGGCTACCCCTGCGTCATATGCAATGCTAGGTTCGACTCCCTGAAACACAAATGGAACCATATGTGGGAGGTGCATAAGGAAAGAAAGAATGAGGCGGACTGCCCGATATGTAATAAGTCTTTTAGGATATATGCTGAGGTTAGGAGGCATTTGAAAGAATATCACTATACTAATGTTACTATTAGCAGGCTTAAGAACAAAGCGAATTTAAAGTGTGACTTGAAAAATATGCTTCAAGCTGCTCCTGTGTTTAGATTGGGTGAGCAGGAGACTCTGGTTGTGTATGAGTGA
- Protein Sequence
- MSDIARKRSRKAKLVPRKCSADSGDDYNTETSQVPVQDASRKKIKKNIVITTDSKHLNCVTLCGEASTLDPISDEIPVNIITVKKIKKEINTEDSSGACPEPCQDASTTNIIERGQGTQPLTPAHFPLPITFDIKVEVEKCDENLPQEMEEVKDEFPKAIDKTTFWDCCGLIQFTLTNERILDATARVLEKSTSVADKIMDIAVRNTIGHQEPGVSYYSRYEAKIQSVLSDWILWKMKHFLRDAPMLYKCHICEVCWWNLQEFRDHVEQHDHIVISMESKLRHETNIIAYRKFYPSVVEIEPEGNCRQCGKDYAYHKKSRHVSQEYYCCPDCGAQFFTCTSLAAHIAITHKKVDHIKCIVCPNLVEPAELTAHLQTVHAVRSDLPIITKHSLYKSCVVCLGRYINFNQHVCGTKGFHIQCQYCFRGFTSSYLANSHMESSRNMFQCEICDAWFNYTCTRYEHILLKHTDNYTLVNKCVLCDEYNVFISLNGGLLHMETVHPDRKTKQKSYFVKVIVPKLCLHPCFDDSYTEEANESEKLPIKSESGEAKDLPEEIPEELVETLIKEEPNEELEIEENFIENNFLHDLNVKEEYEESDCDLEEYEDDIIKLDVLHSPKEVQDTQGGEEFLEGSENQSMDTTDHTENSQESIDQESSEPESSAQESSDDSFMKRPRRIPKHGKRRFYSCTICGFRAYHREFKIHINTKCRRYSNRIKSSTFHCSRCSQEFRTLRKYLAHLTKHGYKNLTCPHCSKSFNTFSKMAPHILGHVKQAFVRVKSITVEDTSKAPEYQCKQCNSAVDVSEFFDHWEVHSSAAGRVQEPLASIRYLGNKKVQDRQKKIPEKNIQLLIDQIQIRSKQCNYCLRSFNRHNDCKRHLIEHLLVDAYDQKMVYQGFRCQICGTQLPAVEKYKQHMRDHANLPVYRCDICDRTFSDSSNFTKHKKVHNFKSIYVCDLCSKKFQSKLGLMKHIKLHEKTVPILCQLCNKLYYFESTYKRHVRAAHDKVPIGYPCVICNARFDSLKHKWNHMWEVHKERKNEADCPICNKSFRIYAEVRRHLKEYHYTNVTISRLKNKANLKCDLKNMLQAAPVFRLGEQETLVVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -