Atri007827.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000029.1:2508133-2515178[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.009 0.53 11.0 0.2 1 23 220 242 220 242 0.97 2 12 0.00035 0.021 15.4 0.9 1 22 248 269 248 271 0.89 3 12 3.9 2.3e+02 2.7 2.4 1 23 285 307 285 307 0.72 4 12 1e-05 0.00059 20.3 2.9 1 23 536 558 536 558 0.98 5 12 3e-05 0.0018 18.8 0.8 2 23 564 586 563 586 0.96 6 12 0.0056 0.33 11.6 4.9 2 23 595 616 594 616 0.96 7 12 0.00043 0.025 15.1 2.2 2 23 620 641 619 641 0.97 8 12 0.11 6.5 7.6 1.7 2 23 655 677 654 677 0.96 9 12 0.00042 0.025 15.2 2.2 1 23 683 705 683 705 0.98 10 12 0.0005 0.03 14.9 1.8 2 23 712 733 712 733 0.98 11 12 0.011 0.63 10.8 2.9 1 23 739 762 739 762 0.94 12 12 0.0037 0.22 12.2 3.2 1 23 766 789 766 789 0.96
Sequence Information
- Coding Sequence
- ATGGACGAAGATATTTTTGATGATTATTGCATTATGAAATCCACCAACGAAGACTCAATACCGTTCAAAAAGTTGATACGGACATCATCTAACTCTAATACTATGAAAAACATCGCTAGCCCAGTTGAAAGGACCAATGAACCTGAAATAAAGTGTGAACCATTAAGTAGCAAAATAGCTGTGGAATATCTTCTCAGTGGGAAGCTTAAGTCTGCGGTTTGTCGTTACTGTCTCAACATATCACCTGCATTATGTGAACTAGATCAGGTTATGCAAATTGCAGGCACAGGAAGCCTGTACAAAGTCACTATAAGAGAGATGATAGCTTGTTTCTATCCGTATAAGACTGGCCAAGACCCAAACTTTCCAGAAAAAATATGTCAAAAGTGCCTAGACAGAGCAATAAATGCATACCTCTTCACTCAACAATGTGAGAGAGCGGAAAGAGCTCTGGTCAACTGTTTCGATGACATATATGAGAAATTAGACAAACTAGACCCAATAGTTAGACAGAAAAAACGAGGCAGACAAAAACTAAACCCAAATTACAACACCCTGTATGCTGAACACAAAAAAGTTATTGATTATGCAGATCCAATAATAAATATTATTAATATTGGAGCAGAATCGTTGACACAAGAACCGGAATGGAACGAATTTGAATGCAAAAAGTGCTGGCAAGTGCTACCAACTTTAGAATCATTACTAAACCATGAGAAATTACATCCAAAATTCATGTGGTACAGCTGCCGCTTGTGCGGCAAATCATTCCCGAAACTAATCCAATTAAAAAAACACAACACACAAGTCCATGTTCACGGTAAAGGCAACCATATAGAAGCAGAAAAAAATTTCAAATGCAACGAGTGCGGTCATGAGTCAGAGAATTATATGCAGCACCTACAACACGTAGAGAAACATAAGTTTAAGAGCATAATGCAGCATTTGATTGAGAAGAAAACGGACAAACTGTGTTTGGTTTGTCTAAACAAAAGTACGGATCTGGTGGAGCTGGACAAAATGATATGCATCCACGGTGGCCATCCGGAGTTGATGGGCGATAAAACATTGTACACTGTGTTGGCTTCGACTTTACCAGATATGAACTATCTACACAACTTTATTGGGACAAAAATATGCGAAAAGTGCCTTAACCATGCAATCACGTCATACATTTTTATACATCAATTCAATTTCACTAGAGAGAGACTTGAGTTATGTGTTAGTCACATGCTGAAAAATCTTAGCAAGATCTCACCAAAAACCAACGTTTTCGTGCAAATATCGCCAGAAACCATAATGCCAAACCAAGAGGATAAGGACGACACTCTACTTTTAGACGAAGAAGATTTGATAGACGAGAGCCAGCTGAAAGTTGACGTGTTAGAAGATGAATTTAGAAGGAACACTGACAGTGAGACCGACTCCGACAGCTACAGTAACCACAAAGTTGAAGTGATTGACAACCCAGCCAAAAATGTGACGAAAACTTATATGAAGCGGAAGTTGGTCAATGGCTTGCAAAGTACGAACTTCCCAGTTGATGTCTGCAGCGAATTCCTAACATTCAAAAAGAAAAAGAAAGTTGGTAAGGTTTGGTGCCAATTTACTTGTCCGGTCTGCAATAAACATTTCATATCAGAATATTTCCTAAAAAGACACATACTCAAACATGTTAACAAAAAAGTTGAGTGTACAATCTGCGACAGAGTATTCACATCGAAGTTCTATCTATACGAACACAGAAAAATGACGCATTTATTAAATATTAGTAGCTACATGTCTTGCAAGATGTGTGGTAGATCGTACACCGACGTCCATAAGTTGCGGACACATGAAAAGCATCACAGGGCGAAGCCTTGTCAACTTTGCAATAAGATTTTTGCTACACAGAAGCATTACGACAATCATATTCAAAGACATGCAGTAAAACTGAAGCTTATAAAGCAGCGTAGGGTGCAAACATGCAGCTTCTGCGAGAAAGAATGTTCAAATGATAATGAACTCTCTCTCCACGTGAATAAAGTACATTTACAAATAAAACCGTACAGCTGTGATATGTGCGAACGCCAATTTTACACGGAAAACAACTTGAAGTATCATAAGAAAGTACATAGTATGCCTTCGAAGGAAACGTGTGAATTTTGTAATAAATCTCTGAAGAGTAGGAAACAATTAGTGATTCATGTCCGAAAACATATCGGAGTCAAGCCCTTTTGCTGTCAAATTTGCGGCCAAAGGTTCTACTCTGCCTTCAAAGTTAGTGAGCATATGAAAGACTACCATGGTGGCAGATTTTGCTGTAGAATATGCAAATCTACCTTTGTAACGAAATATGGACTTAAAGAACACGTGAATAAAGATCATAGTATCATTTAG
- Protein Sequence
- MDEDIFDDYCIMKSTNEDSIPFKKLIRTSSNSNTMKNIASPVERTNEPEIKCEPLSSKIAVEYLLSGKLKSAVCRYCLNISPALCELDQVMQIAGTGSLYKVTIREMIACFYPYKTGQDPNFPEKICQKCLDRAINAYLFTQQCERAERALVNCFDDIYEKLDKLDPIVRQKKRGRQKLNPNYNTLYAEHKKVIDYADPIINIINIGAESLTQEPEWNEFECKKCWQVLPTLESLLNHEKLHPKFMWYSCRLCGKSFPKLIQLKKHNTQVHVHGKGNHIEAEKNFKCNECGHESENYMQHLQHVEKHKFKSIMQHLIEKKTDKLCLVCLNKSTDLVELDKMICIHGGHPELMGDKTLYTVLASTLPDMNYLHNFIGTKICEKCLNHAITSYIFIHQFNFTRERLELCVSHMLKNLSKISPKTNVFVQISPETIMPNQEDKDDTLLLDEEDLIDESQLKVDVLEDEFRRNTDSETDSDSYSNHKVEVIDNPAKNVTKTYMKRKLVNGLQSTNFPVDVCSEFLTFKKKKKVGKVWCQFTCPVCNKHFISEYFLKRHILKHVNKKVECTICDRVFTSKFYLYEHRKMTHLLNISSYMSCKMCGRSYTDVHKLRTHEKHHRAKPCQLCNKIFATQKHYDNHIQRHAVKLKLIKQRRVQTCSFCEKECSNDNELSLHVNKVHLQIKPYSCDMCERQFYTENNLKYHKKVHSMPSKETCEFCNKSLKSRKQLVIHVRKHIGVKPFCCQICGQRFYSAFKVSEHMKDYHGGRFCCRICKSTFVTKYGLKEHVNKDHSII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -