Atri004382.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000014.1:957387-978057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.62 37 5.2 1.3 1 23 251 274 251 274 0.95 2 16 1.1 66 4.4 2.6 1 23 282 304 282 304 0.95 3 16 0.046 2.7 8.8 0.7 1 13 335 347 335 349 0.89 4 16 0.046 2.7 8.8 0.7 1 13 387 399 387 401 0.89 5 16 0.046 2.7 8.8 0.7 1 13 439 451 439 453 0.89 6 16 0.046 2.7 8.8 0.7 1 13 491 503 491 505 0.89 7 16 0.58 34 5.3 1.9 1 11 543 553 543 556 0.90 8 16 5.9e-05 0.0035 17.8 2.0 1 20 608 627 608 629 0.94 9 16 0.0033 0.2 12.3 1.2 2 22 636 656 636 656 0.93 10 16 0.00024 0.014 16.0 0.6 2 23 672 693 671 693 0.94 11 16 0.00056 0.033 14.8 1.8 1 23 698 720 698 720 0.98 12 16 0.0029 0.17 12.5 1.9 1 20 729 748 729 750 0.94 13 16 4.2e-05 0.0025 18.3 1.9 1 23 762 785 762 785 0.93 14 16 0.021 1.3 9.8 0.3 1 23 791 814 791 814 0.87 15 16 0.026 1.5 9.5 0.4 3 19 827 843 825 844 0.89 16 16 0.062 3.6 8.4 1.2 1 23 857 880 857 880 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAATTAACATAAATATTGAAGGATATAATGTAAACGGGATCTGTGTTGGCTGTTTAAACTACAATCGTCGTATGTTTTACCATAACGATGTGAAAGAATGTTATCGTTTACTTGGAAATATCGATGTACCAGATGGGCTAGAAGTGCAAGTCTGTTGGGAGTGTCTAGCGCACATCAGAACTGCTATTAAGTTTAAGGAACAAATGCTCAAGTCCTATGATCTCCTTATCAGTTACTCTCAAGAGCATACGTTTCTCGATTCTCCAAATGACTTCGTATCGAACGCTGTAACTAGTTTGATGACGTCAGAAATAGAGACGTTCTACTATCAGCAAGACGAAGGGGAGACCCCAGATATAGATATCGATAAGGAATCGGATGTTAAAGAGGAGAATGATGAGAAATTCGATTTTGAAGTACCGATAAAAGAAGAAGTTCTAGAAGATTCCCACTTCAGCGATGCGCCGGCGATTGATAATGATATGTCATCAGACGAAGACATACAGCTGTCGAAATTAAAAGTAAAAGAAACTGTCAAAGTTAAGAAGAAGAAGAAGAAAGAGGATAAAGTTAAAAAGAAAGAAGGGAAAGTTAAGAAGAAAGATGCAAAAGAAGATAAATCTAAGAGTAGAAAGCTAAAGAACCTTCCAGAAGAGTTGGTGGAACTGTACACTATGGGCAAAGAAGAGATGTTGACCGTAAGAGAAGAAGACTTGAATAGCAAAGAGTTCCAGAAACTAAAATATAGatgtgataactGCATCATATCCTTCAATACTGAGAAGTTGATGCACGATCATCTCAACGGTAAACATCAACCGAAAGGCGTGGAATGCCACCAGTGCCCCACGTGCCACGCCTACTTCCTGACGCGCGACAACGTGTCCTCGCACCGAGCGCTGCACCGCGCCGCTTACCGCTGCCGCGCCTGCGGCTTCCGCACGACGCTCAAGCGGCGCATGCTGCGACACGCGGGCACGCACCACGCGCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGTGAGAGTATAGTCAGTCCACTGCTGGACTTCCGCACGACGCTCAAGCGGCGCATGCTGCGACACGCGGGCACGCACCACGCGCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGTGAGAGTATAGTCAGTCCACTGCTGGACTTCCGCACGACGCTCAAGCGGCGCATGCTGCGACACGCGGGCACGCACCACGCGCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGTGAGAGTATAGTCAGTCCACTGCTGGACTTCCGCACGACGCTCAAGCGGCGCATGCTGCGACACGCGGGCACGCACCACGCGCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGTGAGAGTATAGTCAGTCCACTGCTGGACTTCCGCACGACGCTCAAGCGGCGCATGCTGCGACACGCGGGCACGCACCACGCGCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGCGGCGCATGCTGCGACACGCGGGCACGCACCACGCGCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGGTGAGAGTATAGTCAGTCCACTGCTGGACTTCCGCACGACGCTCAAGCGGCGCATGCTGCGACACGCGGGCACGCACCACGCGCAGGCGCACGTCTGTCACACGTGCGGCACCAGCTTCAGTACTAAGTCCAAGCTGACGTATCACCGCGGCGTGTGTCGCCAGGAGCGGCCGCAGTGTGACTGCTGCGGGAAGGTCTTCGCCAACAAGGTGACGCTCAAGTACCATCTCAAGACTCTCCCACAGAACAAGGACGATAAACCCAAAGAGAAGCTGTATATACCATGCAAGGGCTGCGACAAGGTGTTCCACTCGAAAAAGAGCTACAGAGCTCACGTCGTCATCCACGACGGCGTGTCGTACCCGTGCCACATCTGCGGCAAGCTGTTCCAGTGGAAGCGGAACCTCGCGCGCCACACGCGCAACCACCGCGAGCGCGAGGCCGGCGCGCTGCACGAGTGCCGCGCCTGCGGGAAGAGCTTCGCCAGCAGGGACTGCTACAACAACCACATGACGCTCAGCAAGCAGCACGTGGCCGAGGACACTTACCAACACGAGTGTGATTATTGCGGCAAGAAATTCGCGACTAAATGGTGTCTGACCGACCACATCGACTGGGATCACCTCAAGCTGATCAAGTATCAATGCAGCATGTGTTTTAAGGCCTTTAAAACGGCGAAGATAATGGTAGCTCACGTCAACAATATACACGAGGGGAAGAAGAAGGAAGCTGAGGGACAGCATCTGTGTGAGATATGCGGCAAGTCTTATAAGACGGTAAAGCGACTGAAAGGCCACGTGTGGGCGATGCACACGAAGCGCTCCACCACCAAGAGCTAcaagtgcaagctgtgcgcggccaccttcacctggcagaccagcatctacaagcacatgaagatgatgcacgccgcgcaggtcaagaccaagACGCCGCGGAGAGTGAAGAAGGAGGAGTTTGTGGAGACCCACGACCTGGCAGCACGGATGCAGTATTTCCAGCAGAATATAAGCACCCTCAGTGTGGTACGCATACAGCCTATGGAGGACTTGAGGAAGAAGTTCACCAACTATGGTTACATCAGGAAGCCGCAGCAGCATTTCTACAGTGACGTCATCAATGTGTGGTACCCCCAGAACGTGCCACGTCTCCGGCATACGGAGAAACTATTCAATATAAAATTCAGAACAAATCCGAGATCACATCATTGA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRRMFYHNDVKECYRLLGNIDVPDGLEVQVCWECLAHIRTAIKFKEQMLKSYDLLISYSQEHTFLDSPNDFVSNAVTSLMTSEIETFYYQQDEGETPDIDIDKESDVKEENDEKFDFEVPIKEEVLEDSHFSDAPAIDNDMSSDEDIQLSKLKVKETVKVKKKKKKEDKVKKKEGKVKKKDAKEDKSKSRKLKNLPEELVELYTMGKEEMLTVREEDLNSKEFQKLKYRCDNCIISFNTEKLMHDHLNGKHQPKGVECHQCPTCHAYFLTRDNVSSHRALHRAAYRCRACGFRTTLKRRMLRHAGTHHAQAHVCHTCGTSFRRTSVTRAAPASGESIVSPLLDFRTTLKRRMLRHAGTHHAQAHVCHTCGTSFRRTSVTRAAPASGESIVSPLLDFRTTLKRRMLRHAGTHHAQAHVCHTCGTSFRRTSVTRAAPASGESIVSPLLDFRTTLKRRMLRHAGTHHAQAHVCHTCGTSFRRTSVTRAAPASGESIVSPLLDFRTTLKRRMLRHAGTHHAQAHVCHTCGTSFSGACCDTRARTTRRRTSVTRAAPASGESIVSPLLDFRTTLKRRMLRHAGTHHAQAHVCHTCGTSFSTKSKLTYHRGVCRQERPQCDCCGKVFANKVTLKYHLKTLPQNKDDKPKEKLYIPCKGCDKVFHSKKSYRAHVVIHDGVSYPCHICGKLFQWKRNLARHTRNHREREAGALHECRACGKSFASRDCYNNHMTLSKQHVAEDTYQHECDYCGKKFATKWCLTDHIDWDHLKLIKYQCSMCFKAFKTAKIMVAHVNNIHEGKKKEAEGQHLCEICGKSYKTVKRLKGHVWAMHTKRSTTKSYKCKLCAATFTWQTSIYKHMKMMHAAQVKTKTPRRVKKEEFVETHDLAARMQYFQQNISTLSVVRIQPMEDLRKKFTNYGYIRKPQQHFYSDVINVWYPQNVPRLRHTEKLFNIKFRTNPRSHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -