Atri004359.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000014.1:548317-557663[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.011 16.3 3.6 1 23 15 37 15 37 0.98 2 12 4.4e-05 0.0026 18.3 0.4 1 23 44 67 44 67 0.91 3 12 2.4e-05 0.0014 19.1 0.3 1 23 75 98 75 98 0.97 4 12 0.0023 0.14 12.9 0.2 3 23 106 125 104 125 0.96 5 12 0.0014 0.084 13.5 1.2 1 23 131 155 131 155 0.91 6 12 2.4e-05 0.0014 19.1 3.4 1 23 161 183 161 183 0.98 7 12 0.00028 0.017 15.7 1.0 2 23 190 212 189 212 0.97 8 12 0.97 58 4.6 0.1 1 23 219 242 219 242 0.90 9 12 0.031 1.8 9.3 3.5 2 23 249 271 248 271 0.95 10 12 0.066 3.9 8.3 7.4 1 23 523 545 523 545 0.91 11 12 2.7 1.6e+02 3.2 0.4 2 23 556 576 555 576 0.77 12 12 0.58 35 5.3 1.4 1 23 702 724 702 724 0.97
Sequence Information
- Coding Sequence
- ATGTTCAAAAAACGTCGTCCCgaggtcctggGAGAAAAGCCCTTTCAATGTTCATACTGTGACTATGCGTGTAGAGACAACTCTACTATTAGGAGACATCAAGAGAGACACATGGGGATTTCAAAAGATTATCCCTGCTCCATATGTAATAAGAACTTCAAAAAGAAAGAATCTTTACAATTACATGTGGACGAAGTGCATTTTGAGATTGACACGCGCAAATACCCCTGCCAGGAGTGTGACAAGGTATTCAAGACTAAGGCGACACGCAATATACACGTGAACACAGTCCACAACACATCGAACAAGGTGAACTGTGAGATATGTGGGGCTAAAATCACCAGGAACAACCTACAGGCGCACATGCGGCGCCACGTGGACGTGAAGCCATATAAGTGCAGCTTCATTCCCTGCAGCAGACGTTTCAAGGATAAGGGGGATTTGAAGAAGCACACCTTGATTCACTACCCCGACCACCAGCATCAGTGTGATATATGTCACAGACGGTTCGCGCGTCGATCTAGGCTGACGGCGCATGCGCGAGTTCATCTCAAGCACGGATATGTACAGTGCGATCATTGTGGGATTACGTTATCATCAAAGTTATATCTATCAAGGCATATTAAGAAAGCTCATGGACCGAACTCCAAGAAGTATGTGTGTGATATATGTGATGTGACTACGTATGGTCGACGAAGGATTATTATGCATATTAAATATGGACACGGGGATGAAAATAACACGGAGTGCTACATTTGTAAGAAGGATTATAGAAAGTATTTGCATTTGAAAAACCATTACATGAGTTATCACAATATTGAATACAGCGTGCTGCCAAAGAAAGAACAATCGGAAGTCATTATAAAACAAGAAACCTATGACGTGGAAGTTATAAATGAAACGCCAGAGTTTCTTTATGAGGTTGATGTGCAGAAACAAGAGATTGATATGGATATTTCAGAAGAAATGATATACAAGCCACAGAGCCCTGCTTACCCCATTGATACAGATACCATTACCTATTCTAAGAAGGTGCAGTCAGAAGACATATCCAGAAGTCTTCTTGAAAGGGAGAAGGAACAAGAAGATGAGTTCGGAGACTTCTTTATAGGTCATGTTATGAAGAAATCGGAAGATATTACAGAAATACCAAAACAGATAGAAGACGAGAAGAAGAAGGAGAAAGTCAAGCAATGTCTCGACAAACTACTGTCAGAAGTGAGAAGTCAGAAGGAATGGATCGCTTTAGAGAAGCTAAGAAGGCAATACAACAGACGAATCAAGATGGCTACCCAAGGCGGAAATAAAAAAGAGCAAACCTCAATCAGATATTTCAAAAAACCTGAAGAAATTAATAAAGATAGTAATATTGAAAATACAAGTGTTGATGAAAATGTTACTGAAAACGATGAAATTAGTGATAAGGTCAATGATGATGAGAATATAAATGGTGATGATGTTGAAAAAGATACAGAAAGTGAAGAAGATAATATAAAAGATAAAGATTATACAGAGTGTGTTTCAGATGATGAAGTTAATACGAATGGGAAATTGAAATTCAATACGCATCAATGTTATATCTGCTTTAAGTTATTCAAAACGAAAACAGACTTGAAACGGCACTGTATGAACCACTTCGATATATGTAACGAGAAAATGCTCAAAAAATGCCCATTCTGCGGCTACGTCACCAACCTACAGATACAAAAGCATATACGACTTGTACACAAAATATACATCGATATACCTTACGGGAGAGTGAAGGAGAGAGATACGCAAAACGGCTCCAAATACGTCTTTGAGATCGATAAAAACTGCGAGCTTGAGATCATACCCAGCATCAGTAACCTCAACAAGATAGCGTCCATGAAAATCGATGAGAAAAATCGTCAATCGAAAAGCATTTTTCTCGGCAAGACGAAATTGGTCAAGAAAGGGGCGGACTGGCTGGTGGAAAAGCAGGCAGTGAGTGTTGACAATAATTCTTTACTACCAGAGTTCAGTACGGAAGAGTATCAGAGTCTGAAATTCCATGGTGAAGGGTACTTGGAAAGGATCAGAAATTTAAGCATCTTAGCTAAAAGGAAAGGGGTCAAAATGCTGTACCCGTGCTCGGGGTGCGAGAAGCTCTGCCTCACTATGAGCGCTTTGAAACTACATAATAGGAAACACGAAGAAAATCCAAAAGCGTTCAAGCCAAAAGTGTGGAAAAATAAAATTTTAAAAGGGAAACATGGTAAAGTTATGCCCAAAAAACGGTCAAAAGTTGTTGGTAAACCGAAAAATAGTTCTCAAACTCAAAATACACCAAAAATTAGGCAAAATCTCACAAAAATTAGTCAAAATCTAACAAGAAATATTCAAAACAGTACACCGAATACCGATTCTACTAACATCAGACCAATAGACCGCAGAAAACTAAAAAAAGCAGACGCAACGCCCAAAAATAAACAAATCGATCTCAAAAACCGTTTCGCAGACCCAAATCCTGTGAAAAACAAACACAAATGCGACAAAAAACTAATAGAGTTCTACAAAAATAACATAAAAGGCGGAGACATTGAGTTCTGGCAATTTCTAAAGATATACAACAAGATGAATAGAGAGAATGTCAACGATTTCAAAGACTTAGAAAGCAGATTCGACTTCGGCATGCATATAAATAACGTACCAGAAACCCCGGTATCAGAAACCTCGGCCACAGAAAACACTGAACCGAAAACGGTGAAAAAAATAAGGAAAAATAAGAAAAAGGCGTTCACGAGAGCAATTATGATCAGTAGAAAGGAATATTTGAAGAGAAATGAGATGAAAAATCGGATGAGGAGGCGGTTAAAAGAAGCCAAAGTTAACTAA
- Protein Sequence
- MFKKRRPEVLGEKPFQCSYCDYACRDNSTIRRHQERHMGISKDYPCSICNKNFKKKESLQLHVDEVHFEIDTRKYPCQECDKVFKTKATRNIHVNTVHNTSNKVNCEICGAKITRNNLQAHMRRHVDVKPYKCSFIPCSRRFKDKGDLKKHTLIHYPDHQHQCDICHRRFARRSRLTAHARVHLKHGYVQCDHCGITLSSKLYLSRHIKKAHGPNSKKYVCDICDVTTYGRRRIIMHIKYGHGDENNTECYICKKDYRKYLHLKNHYMSYHNIEYSVLPKKEQSEVIIKQETYDVEVINETPEFLYEVDVQKQEIDMDISEEMIYKPQSPAYPIDTDTITYSKKVQSEDISRSLLEREKEQEDEFGDFFIGHVMKKSEDITEIPKQIEDEKKKEKVKQCLDKLLSEVRSQKEWIALEKLRRQYNRRIKMATQGGNKKEQTSIRYFKKPEEINKDSNIENTSVDENVTENDEISDKVNDDENINGDDVEKDTESEEDNIKDKDYTECVSDDEVNTNGKLKFNTHQCYICFKLFKTKTDLKRHCMNHFDICNEKMLKKCPFCGYVTNLQIQKHIRLVHKIYIDIPYGRVKERDTQNGSKYVFEIDKNCELEIIPSISNLNKIASMKIDEKNRQSKSIFLGKTKLVKKGADWLVEKQAVSVDNNSLLPEFSTEEYQSLKFHGEGYLERIRNLSILAKRKGVKMLYPCSGCEKLCLTMSALKLHNRKHEENPKAFKPKVWKNKILKGKHGKVMPKKRSKVVGKPKNSSQTQNTPKIRQNLTKISQNLTRNIQNSTPNTDSTNIRPIDRRKLKKADATPKNKQIDLKNRFADPNPVKNKHKCDKKLIEFYKNNIKGGDIEFWQFLKIYNKMNRENVNDFKDLESRFDFGMHINNVPETPVSETSATENTEPKTVKKIRKNKKKAFTRAIMISRKEYLKRNEMKNRMRRRLKEAKVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -