Basic Information

Insect: Abrostola triplasia
Gene Symbol: -
Assembly: GCA_946251925.1
Location: CAMIUJ010000051.1:3099707-3101302[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.6 95 3.9 2.2 2 23 213 235 210 235 0.87

2 10 0.00026 0.016 15.8 1.3 1 23 241 263 241 263 0.99

3 10 0.0049 0.29 11.8 6.9 1 23 269 292 269 292 0.96

4 10 0.0045 0.27 11.9 0.0 2 20 299 317 298 319 0.93

5 10 2.7e-06 0.00016 22.1 3.7 2 23 339 360 338 360 0.96

6 10 4.8e-07 2.9e-05 24.4 3.2 1 23 367 389 367 389 0.98

7 10 0.00023 0.014 16.0 0.8 1 23 395 417 395 417 0.98

8 10 6.4e-06 0.00038 20.9 2.1 1 23 423 445 423 445 0.96

9 10 3e-05 0.0018 18.8 3.9 1 23 451 473 451 473 0.98

10 10 1.2e-05 0.00072 20.0 3.9 1 23 479 502 479 502 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.6	95	3.9	2.2	2	23	213	235	210	235	0.87
2	10	0.00026	0.016	15.8	1.3	1	23	241	263	241	263	0.99
3	10	0.0049	0.29	11.8	6.9	1	23	269	292	269	292	0.96
4	10	0.0045	0.27	11.9	0.0	2	20	299	317	298	319	0.93
5	10	2.7e-06	0.00016	22.1	3.7	2	23	339	360	338	360	0.96
6	10	4.8e-07	2.9e-05	24.4	3.2	1	23	367	389	367	389	0.98
7	10	0.00023	0.014	16.0	0.8	1	23	395	417	395	417	0.98
8	10	6.4e-06	0.00038	20.9	2.1	1	23	423	445	423	445	0.96
9	10	3e-05	0.0018	18.8	3.9	1	23	451	473	451	473	0.98
10	10	1.2e-05	0.00072	20.0	3.9	1	23	479	502	479	502	0.98

Sequence Information

Coding Sequence: ATGTCGGACGATGAAGAATCTTATTGTCGATTATGCGCTGAACCAACGCCTAAAGAAACGCTCATAGCCCCCGACGAAGACGTAGGAATCAATTCCAAAATAGCGACAAAATTGTCATGGATTAATGTTGATATTTCAACCAGAAATAATCTTCCAACCAGCATTTGCTTCTCGTGTTTCGACCTTTTGGAACGTACATGGTCCTTTTTGCACAACGTACGGACAGCACAAGTGAAATTGAACGAGTTATTTACTACCAAACATGATAAAGAAAATTCAGCACCCGAAAGTAAGGCAGACGGCAATAATCATGGAAAACCGGTGAACGTAGATTGGGAGGACTTCGAGCGAGTGAAACGCGAGGTAAAGCCTGAAATACTGAGTGATGAGCTGCAAATAGTAGACCCAAACTCCTTATTAGACCTAGATTTAGCGGCTGTGAAGACAGAAAGACATAGTGCTGACCCTGATAATTCCGAGGGCTTTAATACCACTGATAGTGATGTACCATTGTATTTATCTGCAAAGAAAAAGAGAATTAAGAAGAAAAAGAAATTGAAATACAGTCCTGATAATGAAAACGAAAGCTGTACTAAAGAGTTTGATAACTGCATGACTTGGGACGATTATATGTGCCGTTGTGCGGTGTGTGATGCTCAATGCAAGAACATGATGTCTCTACGGTTGCACTCGTTACAAATCCACTCCCAATGCTGTACTTTCAAATGCTTAGACTGCAGCAAAGTTGTTAATAACTACAAATCCTTTATAAGCCATGTACGCACACACAAAAAGATGCTACGGCACTGCTGCGAGTTCTGCAACAAACGGTATACAATGGTATCTAGCTTGAAGAAACATAGGAACACATTACATGTTGATGCGTACCTCACTACGTGCCAGAACTGTGGAGCTACGTTTGATTCCGAAGAACTGTTACAAGACCACCTAATTTTGTATACTAGACCATACCGGAAGCGTGCAGTGAAATGTGAGAAGATAGACTGCGAATTGAAGTGTGAACATTGCAACAAGGAGTTTAAGTCACGGAGCAATCTGCAGCAACATAAACTTGTGCACACAGAACGCAGTAGGGACTTCTCCTGCCACATATGTGGTAAAATGTTCTTCACGAAAGGCACTCTAAGCACTCATATGATGACTCACGATGACACCAAGCCTTATAAGTGTGAATTCTGTCCAATGGCGTTCCGGGCTAGAGGGAACCTACATTCCCACATCAGCCTACACTCCGGTGCTAAACCATTCGTGTGTGAGCAATGTGGTAAGAGTTTCCGAGTGAAAAGACATTTGAAATCACACTCTATTGTGCACACAGACTTGAAACCGTACTCCTGTGAATACTGCAACAAGACATTTAGGTTTAAAACCCGTTTGAATCTACATTTAAGGCAACACACCGGTGCCAAGCCTTACAAGTGTGTCTATTGTCAGCGGGACTTTACGAATGGGTCTAATTTCAAGAAACATATGAAACGTAGACATAATATTGATACGTCAAGGAAGAGGTATTTAAATCATGTAGTGAACGAACCGAGCTTAGATGACAGTGATGTTGAGACTAATCAGACGTAG
Protein Sequence: MSDDEESYCRLCAEPTPKETLIAPDEDVGINSKIATKLSWINVDISTRNNLPTSICFSCFDLLERTWSFLHNVRTAQVKLNELFTTKHDKENSAPESKADGNNHGKPVNVDWEDFERVKREVKPEILSDELQIVDPNSLLDLDLAAVKTERHSADPDNSEGFNTTDSDVPLYLSAKKKRIKKKKKLKYSPDNENESCTKEFDNCMTWDDYMCRCAVCDAQCKNMMSLRLHSLQIHSQCCTFKCLDCSKVVNNYKSFISHVRTHKKMLRHCCEFCNKRYTMVSSLKKHRNTLHVDAYLTTCQNCGATFDSEELLQDHLILYTRPYRKRAVKCEKIDCELKCEHCNKEFKSRSNLQQHKLVHTERSRDFSCHICGKMFFTKGTLSTHMMTHDDTKPYKCEFCPMAFRARGNLHSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLKPYSCEYCNKTFRFKTRLNLHLRQHTGAKPYKCVYCQRDFTNGSNFKKHMKRRHNIDTSRKRYLNHVVNEPSLDDSDVETNQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00000565;
90% Identity: iTF_00000565;
80% Identity: -