Atri002813.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000009.1:570133-585834[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.0015 0.086 13.5 2.3 1 23 239 262 239 262 0.96 2 38 0.033 1.9 9.2 0.3 2 23 288 310 287 310 0.94 3 38 0.033 1.9 9.2 0.8 1 23 332 354 332 354 0.97 4 38 0.39 23 5.8 3.5 1 23 358 380 358 380 0.92 5 38 0.062 3.6 8.4 1.6 1 23 384 407 384 407 0.95 6 38 0.0031 0.18 12.4 1.4 1 23 443 466 443 467 0.95 7 38 0.0044 0.26 12.0 3.3 1 23 472 494 472 494 0.97 8 38 2.7e-06 0.00016 22.0 3.4 1 23 500 522 500 522 0.98 9 38 0.16 9.7 7.0 0.0 3 23 572 593 570 593 0.94 10 38 1 62 4.5 0.3 6 23 618 636 614 636 0.94 11 38 0.00058 0.034 14.7 3.2 1 23 641 664 641 664 0.96 12 38 0.0072 0.43 11.3 0.8 1 23 669 692 669 692 0.96 13 38 0.69 41 5.1 0.5 2 23 695 717 694 717 0.95 14 38 0.059 3.5 8.4 2.7 2 22 724 744 723 744 0.94 15 38 0.027 1.6 9.5 0.3 1 22 803 824 803 826 0.88 16 38 0.56 33 5.3 0.1 3 23 855 876 853 876 0.91 17 38 0.39 23 5.8 0.1 3 23 900 922 898 922 0.94 18 38 0.0017 0.1 13.2 1.5 3 20 929 946 927 950 0.90 19 38 0.049 2.9 8.7 0.5 1 23 955 978 955 978 0.97 20 38 0.00079 0.047 14.3 0.2 2 23 984 1006 984 1006 0.94 21 38 0.00028 0.017 15.7 4.7 1 23 1010 1033 1010 1033 0.97 22 38 0.00033 0.019 15.5 0.7 2 23 1040 1061 1039 1061 0.96 23 38 0.034 2 9.2 1.7 1 23 1067 1090 1067 1090 0.94 24 38 5 2.9e+02 2.4 0.5 1 23 1112 1134 1112 1134 0.92 25 38 9.4 5.6e+02 1.5 0.6 2 23 1162 1184 1161 1184 0.91 26 38 0.056 3.3 8.5 1.5 2 23 1205 1227 1204 1227 0.94 27 38 0.01 0.59 10.8 5.5 1 23 1232 1254 1232 1255 0.93 28 38 0.13 7.6 7.4 2.0 1 23 1259 1282 1259 1282 0.91 29 38 0.022 1.3 9.8 1.2 2 23 1285 1307 1284 1307 0.95 30 38 0.4 24 5.8 1.2 1 20 1311 1330 1311 1332 0.93 31 38 0.0075 0.44 11.2 2.9 1 23 1381 1404 1381 1404 0.94 32 38 0.32 19 6.1 0.0 2 23 1433 1455 1432 1455 0.92 33 38 0.25 15 6.4 0.5 1 23 1477 1500 1477 1500 0.95 34 38 8.2e-05 0.0048 17.4 1.3 1 23 1505 1528 1505 1528 0.94 35 38 0.001 0.059 14.0 0.1 1 21 1534 1554 1534 1557 0.91 36 38 0.00015 0.0091 16.5 0.6 2 23 1563 1585 1562 1585 0.97 37 38 0.051 3 8.6 7.7 1 23 1589 1612 1589 1612 0.97 38 38 0.039 2.3 9.0 2.2 1 23 1646 1668 1646 1668 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAGATTGTGGTGAAGGAGAGCCCCGGCCTTTGCCGGTGCTGTCTCTCCGAAGGATGCTACAAGGATTTGGGTTCGGAATACACTTGGATGAATGATACCGAGGTGTATGCAGACATGCTGCTTGAGTGTTTTGATATAAGCATAACACAACATAATGAGGGTCCAAACGGTCCTAATCGTCTCATCTGTGAAGTCTGCATCACGAGGCTACGGGACGCTTGCAACTTTAAGAAGCAAGTGCTGGAGTCGGAAAAGAAGTTCATTGATATGATGGGCAGGGGAGAGTTCAGGCCAAAGATGCTGATTTACCAGACACAGATGAAGACGGAGGACACGGCGCCGGATGCTCCCTCCGAGGACCCAGAAGTGGAGTACCTGGACGACGATATTGACTTCCAAGAAGACGACATGAAGGGTGAGGAAGAACCATCAGTATCAAACATCACAGTAGCCACTCTCCCGATCAAAGGCAAGCGGGGACGGCCGCGGAAGAATGCCATCGTCAAGACGGAGAAGAGGGTCAAAGTGGCTAAAGCTGATGACAAGAAGGCAAAAGCAGTTGCTAAAGGTATAACCACGGGCCCCGAAGCGCCGATAAAGCCCATAATGTCATCTATAAAACGCAACAGACTTATGAAGAAAAACGCTATGTTAGTTCTAGAAAAGTCCACGGTGTTACCGTTTAAGTGGCACCGGCAAAACTATCTCTGTTTCTATTGCCATCTCACTTTCGATGACACTGATCTGCTCAAAGAACACACGAGGACAGAACATGAGAACCGAAATATCAAAGCAGCTGTTGCGTATTTGAGAAGAGATGAGAAAGTCAAAATCGATGTCTCAGTCTTACAGTGTCGGTCTTGCGACAAGAACTTGAGCGACCTCGACTCTTTGCTTGAACATCTGAAGGAAAGCCATGACGTTATATTCGCTGAGGAGTGCGGTTATGGTGTGATACCATACTTTTTGCGCAATGAAGACTTTAACTGCGCCGTCTGTAACGAAAAGTTTCAATACTTCATGAAACTAAATGAACATATGAACGGACATTTTGGGAGCTACGTCTGCGAGCTCTGCGGGAAGTCCTTCCTCAGTCTAGACCGGCTGCGGTGCCATCTACACACCCACGGATCTGGATACAGATGTAATATATGCCAGGAACGATTTGACTCGCTAACGCGGAAACGGAAACACGAGTCGACAGTCCACAATAAAAATAGGCTGCACAAATGTTTCTTTTGCAACGAAACCTTTCAAAATTACAATAAAAGAAAGCTCCACCATAGTAAGGAGCATGGCGTGAAATTAACAGAATTCAACTGTCCAGTGTGCAACAAATCGTTTCAATTGCTAAGCCGTATGACGGTTCACATGAAAGAAGTGCACCATAAAGAGAAGAATTTCTTCTGTGCTGTGTGCGATCAGAAGTTCTTCTCGAAGAATCATGTGCAGAATCATATGATCAAGCATTTTGGCGAGAAGGTGCATCAGTGTGATGTCTGTAAGAAGTCGTACGCTCGGAAGCAGACGTTGAGGGTACATATGCGCACGCATATTACTAAGAACAAGAATATTTCCGAGTATACGGAGTTGCGGAAGCATACCAAGTCTCATGGCAAATGCTCGATAAAAGACCATTCCTTGAAGGTTCTAAAAGGAGGTCAGAATATGGAGATCAAAATCGACATCTCCGAAATTAATTGTGAGATATGTTTTGAACCCTTTCCGACGTTCGATGAAGTTGTGGCTCATTTGTTGGTTAAACATAAGCTAGAGTACGATAAAGACGTTGAGATGGCTACGGAAGAGTATAAGCTGGTTGACCTCAGCTGTATCAGTTGCGAAGAAAAGTTCACGTACTTTGGATACTTAGTTTCTCACGTAAATACTAATCATCCGAAAAAATGCTTCATATGCGACAACTGTAACCAGAAATTTAACAAAAAACGCGATTTATTCTCTCATATGAAGAATTATCATAGAGAAGGAGGCTACCAGTGTGAGATGTGTCCACAGGTTTTCAACTCGCTAAATATTTTAAGAAAACATACAAATAATAAGCATATGACGCGCTGTAATGTATGCCATCTCAAACTACCGTCAGCTGCGCTAAAACGAAAACATATAGAGATAGAACATCCAGATAACGGGTCCCTCCAATGCGACAATTGTTTCAAAGAGTTCCATACAAAACAGGGTCTAAAAATGCATAAAAGAAAGTGTAAAGGTGAAGATATCTTCGAAATTGCGATCAAGAAAGAAGAGTATGTTGGAATGGACTTAGATCAGAATTATGACGAAGTAAAAACGCCTAGTGTGAAACAAATTAGGGAGAATATTGTTATTGTAATTACTATGTCTACGGCCATACCTTTTAACTTTTATAAAAATAAATTTAACTGTTTTTACTGCTCGAAGGACTTCGCAGACTCGGATGCGATGAGAGAGCATTCCGTGATAGAGCACCCTGTTTGCGATGTCAAACAAAAATGTATCAAAAAATGTCGGGAATCGGCCTCTTGTGTTAAAATTGACATTTCATCTCTAGCTTGTAAGGTTTGCTTCGAGTCTATGAGTGATTTGGACAATTTGCTTGACCATTTGATTGCGAAACACAACGCGAATTACGATAAATCGATAACGACATGCTTGCAGCCATACCGACTGATCAAAGACCACATGGCATGTCCAAACTGTCCAGAAGAAGCTTTCCGTTTCTTCGGAACTCTACTCAAACATATGAACGAAAAACATACGAATAATAACATTATTTGCGTGCACTGCGGCCAATCATTCCGTAGGGACCAAAATCTACGCGTTCATATCTGGAGGCATCATCGCGATGGCAGATTTAAATGCGAAATTTGTGGCGCTGACTGCAATATACCGTCTAGGCTGTACATGCATATGGCACGAACACACGGAGTTAAGGCAGCGAAATGCCCGAAATGTCCCGAGAGTTTCGCCACGCAGTACCTCCGACAAAAGCATTTGATAGAAGCCCATGAATCTGGACACAAATGCAGTTATTGTGGGAAGCTTTTCACCAGAAATTCGTTCATGAGAGACCATGTTAGACGAACACATTTGAAGGAGAAGAACGTAGAGTGTACTATATGCAACATGAAGTTTTTTAACAATATTCTTCTCCGCCGACACATGGTGAAACATAGTGGGGAGAAGAACTTTCACTGCGACGTGTGTGGAGAAAGGTTCTTTTGGAGGAAGAGTCTGAAGACGCATATAATGGCTAGGCATAACAGGCTGATCCCAATACTATTCAACAACACCACCTTGTTGCCTTTTAAATGGCGCGGTAAATATCTGTGCTTTTATTGTGGGGACGACGTCGACACGTACGAACGTCTGCGGAAACACACGAACGGCCATGGACTCTGTACGGACAAAGACAGAGCTATAAGACTAGTCAAAGCCGCAGACAGCGAGATCAAAATCGATGTTTCCGATATCACTTGCGAAGTATGCTCGGATACGTTCCCGCATATCGATTACGTTATCGATCATCTCATTCATAAGCATAAGCTCCCGTATTCTAGGAGCGTGCAGCTCATGATGACTACGTACAGGCTGATAGATCTTCAATGCTTGAATTGCGATAAACAGTTCGATTATTTCCGTAAGCTCATCAGTCATACGAATAATAACCATCCGAATAATTGCTTCCTTTGCCACGAGTGCAAGCAAAAGTTTAACAAGAAGAGGGATTTGGATTCTCATGTAAGGATCCATCATAGGAAGGACTATTCTTGCGTCAAATGCGAAATGATCTTTCGGTCGAACTCGGCGCTTCAGTGCCATCGTTCCAACGATCATTCTTCTACTTGCAATATATGCTTCCAAACCTTCTCGTCCGATAGCAAACGGCTGGCTCACATGAAACAAGACCACGATTCAGATCATCAGTGTGGGTTCTGCCTAAAAACTTTGACGACGAAACAAGCCTTCTTAAGACACGCGTCAAAATGCGCCCTCGAACAAAATACTCCTAAAGAAACAATTATAGTAGACGATGAAGAGAAGAAGCAATCTGTAAAAGAAATAAGAAACAGTATTGCTTCAATTTTCAACATGACAACAGCATTACCGTTCAAATTCTTCATGAATCGTTTCCGATGCTTCTATTGCTCAAAAGACTTTACGGAATGCGATGATTTGAAAGAACATACGGTTATGGAGCATCCTCTATGCGATATAACATTTAAATCTATGAAATTGAGGAACCGGTACGATGGTGTGCAAATCAAAGTCGATATTTCGGCGCTATCCTGCAAATTGTGCCTGGAATCGTTGAATGATTTGGATGATTTGATCGCACATTTGAGCGGTGAACACAAAGTTCCGTGTGATCGAACCGTTGAAAGTTATTTGCAATCATACAAGTTGATTAAGGACAGTTTCCCTTGTCCCCTATGCGGGGAAGTGCACAGATATTTTGGACTTCTACTCAAACATGTGAGCAAAACCCATACCGAAAATAGGCATATATGTATGTACTGCGGCAAATCTTTTCGGACCGACCCGAATTTAAGGGCCCACGTGTCGCGGCGGCACAAAAACGCCGGCAACTACAAGTGCGGTAGCTGCGATCTCGTCTTCTCCACCAATAACGCGCTAAAGATGCATCTTGGAGCTGTTCACGGCAGCAAAATTGTTCAGTGCACCGAATGCTTGGAGAAATTCACCTCACAGTACTGGATGCAACGGCACATGATCACGTCACACGGCACCGGCCACAAATGCTCTCACTGCGGGAAGCTCTTCATTAAAAACTCCTTTATGGTAAACCACGTGAGACGGTGCCATTTAAACGAGAAAAATGTTGAATGCACAGTCTGTTTTGACAAATTCTTCGATGGTCAAAGACTGAAAATGCACATGGTCAAACATATTGGCGAAAGGAACTTCCATTGCGATATTTGCGGCAAAAAGTTTCTTTGGAAACGGAATCTTCGTGGCCATATGTCTTCCCACCTCAGGGACTCGAACTCTCAGAACGTCACCTAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNDTEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVLESEKKFIDMMGRGEFRPKMLIYQTQMKTEDTAPDAPSEDPEVEYLDDDIDFQEDDMKGEEEPSVSNITVATLPIKGKRGRPRKNAIVKTEKRVKVAKADDKKAKAVAKGITTGPEAPIKPIMSSIKRNRLMKKNAMLVLEKSTVLPFKWHRQNYLCFYCHLTFDDTDLLKEHTRTEHENRNIKAAVAYLRRDEKVKIDVSVLQCRSCDKNLSDLDSLLEHLKESHDVIFAEECGYGVIPYFLRNEDFNCAVCNEKFQYFMKLNEHMNGHFGSYVCELCGKSFLSLDRLRCHLHTHGSGYRCNICQERFDSLTRKRKHESTVHNKNRLHKCFFCNETFQNYNKRKLHHSKEHGVKLTEFNCPVCNKSFQLLSRMTVHMKEVHHKEKNFFCAVCDQKFFSKNHVQNHMIKHFGEKVHQCDVCKKSYARKQTLRVHMRTHITKNKNISEYTELRKHTKSHGKCSIKDHSLKVLKGGQNMEIKIDISEINCEICFEPFPTFDEVVAHLLVKHKLEYDKDVEMATEEYKLVDLSCISCEEKFTYFGYLVSHVNTNHPKKCFICDNCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQVFNSLNILRKHTNNKHMTRCNVCHLKLPSAALKRKHIEIEHPDNGSLQCDNCFKEFHTKQGLKMHKRKCKGEDIFEIAIKKEEYVGMDLDQNYDEVKTPSVKQIRENIVIVITMSTAIPFNFYKNKFNCFYCSKDFADSDAMREHSVIEHPVCDVKQKCIKKCRESASCVKIDISSLACKVCFESMSDLDNLLDHLIAKHNANYDKSITTCLQPYRLIKDHMACPNCPEEAFRFFGTLLKHMNEKHTNNNIICVHCGQSFRRDQNLRVHIWRHHRDGRFKCEICGADCNIPSRLYMHMARTHGVKAAKCPKCPESFATQYLRQKHLIEAHESGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECTICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLKTHIMARHNRLIPILFNNTTLLPFKWRGKYLCFYCGDDVDTYERLRKHTNGHGLCTDKDRAIRLVKAADSEIKIDVSDITCEVCSDTFPHIDYVIDHLIHKHKLPYSRSVQLMMTTYRLIDLQCLNCDKQFDYFRKLISHTNNNHPNNCFLCHECKQKFNKKRDLDSHVRIHHRKDYSCVKCEMIFRSNSALQCHRSNDHSSTCNICFQTFSSDSKRLAHMKQDHDSDHQCGFCLKTLTTKQAFLRHASKCALEQNTPKETIIVDDEEKKQSVKEIRNSIASIFNMTTALPFKFFMNRFRCFYCSKDFTECDDLKEHTVMEHPLCDITFKSMKLRNRYDGVQIKVDISALSCKLCLESLNDLDDLIAHLSGEHKVPCDRTVESYLQSYKLIKDSFPCPLCGEVHRYFGLLLKHVSKTHTENRHICMYCGKSFRTDPNLRAHVSRRHKNAGNYKCGSCDLVFSTNNALKMHLGAVHGSKIVQCTECLEKFTSQYWMQRHMITSHGTGHKCSHCGKLFIKNSFMVNHVRRCHLNEKNVECTVCFDKFFDGQRLKMHMVKHIGERNFHCDICGKKFLWKRNLRGHMSSHLRDSNSQNVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -