Atri002843.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000009.1:813854-819254[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0019 0.11 13.1 3.8 1 22 78 99 78 103 0.94 2 26 0.0072 0.43 11.3 0.2 3 23 128 148 127 148 0.95 3 26 0.0041 0.24 12.1 0.4 2 23 171 192 170 192 0.97 4 26 0.017 1 10.1 0.1 1 23 196 218 196 218 0.95 5 26 0.93 55 4.7 0.1 1 10 223 232 223 242 0.95 6 26 0.00034 0.02 15.5 1.8 1 23 252 275 252 275 0.97 7 26 0.0024 0.14 12.8 1.7 1 23 282 305 282 305 0.97 8 26 1.9e-05 0.0012 19.4 0.9 3 23 314 334 312 334 0.97 9 26 2.3e-05 0.0014 19.1 2.1 1 23 340 362 340 362 0.98 10 26 0.015 0.87 10.3 0.2 1 23 477 500 477 500 0.95 11 26 1.2 73 4.3 0.1 2 23 527 548 526 548 0.95 12 26 0.32 19 6.1 0.7 2 23 571 592 570 592 0.96 13 26 3.1e-05 0.0018 18.7 1.0 1 23 596 618 596 618 0.98 14 26 5.9 3.5e+02 2.1 0.3 1 22 623 644 623 646 0.76 15 26 0.013 0.75 10.5 0.6 1 23 652 675 652 675 0.90 16 26 0.0021 0.12 13.0 0.7 1 23 682 705 682 705 0.96 17 26 0.0097 0.57 10.9 0.2 1 23 757 779 757 779 0.98 18 26 2.4 1.4e+02 3.3 0.8 2 23 803 825 802 825 0.95 19 26 0.00069 0.041 14.5 3.3 1 23 847 869 847 869 0.98 20 26 0.0024 0.14 12.8 0.1 3 23 875 895 873 895 0.95 21 26 0.0099 0.59 10.9 1.1 1 23 903 926 903 926 0.92 22 26 0.016 0.92 10.2 0.8 1 23 932 955 932 955 0.95 23 26 0.031 1.8 9.3 0.5 1 23 961 984 961 984 0.96 24 26 6.1e-05 0.0036 17.8 2.5 1 23 990 1012 990 1012 0.97 25 26 1.9e-06 0.00011 22.6 1.1 1 23 1018 1040 1018 1040 0.99 26 26 0.00066 0.039 14.6 5.8 1 23 1046 1068 1046 1069 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCAATTGGACAGCGATCTGACGAAACTTTTCTATTTTTAGGAAAACGCGGACTAACGAGTGAAGATATTGTCATAAAAATCGAAGGTGATTGCCAATTACAAAAAATACCCAAGCCCAAATACATAAGGAGCGCGCGAGCCGAAGCGAGGATAACCACTAAGAAAAATGCCACAGCGATCATGAATTGCTGGTCCTTCCTCCCTTTTAGATGGAAAAAGAACCGATTCAAGTGCGCCTACTGCGAGGAAAATTTCACCGATTGCTTCCAACTTAGGGATCACATCAGAATCTGTTCTGTCCACCACGAAATGAAAGACATTTACAGCAAATTCAAAGAGATGTCTCTCATTAATGTTGATGTTACTGGCGCTATTTGTAACTTCTGTTCGATTCCATTTACCAGCATCAGTCAGTTAAGAGAGCATGTCATCCAACACGGTCTAGAGTTCGATACGAATCACCCAGACGGCGTACTCCCGTTTTCATTAGACAAAGAGTCTTGGCAATGCTTTATATGTCCAGAAAAGTTCAACAATTTCCTTAAATTGTACGAGCATATGAACATTCATTACCAACATTATATATGCGCGACGTGCGGCAAAGGATATATGACGGCGCCAAGGTTAAGAAAACATTCTGAAGTCCATATTTCTGGGTCCTTTCCCTGCAATGAATGTGGAAGAATCTTTCTCATGAGGGCGGCTAGAGACTCGCATAAAGCTTCCGCGCACCCCAAGGCTCCTAGATACGAATGTCCACACTGCAACATGCGTTTTGACAACTATTACGATAGAATAAACCATATGAAGAACGCTCACAGTGAAAGGGAAGTCTCCTATAACTGTACGCATTGCGAAATGTCTTTTAAAACGAGCGGCAAGCGCGCGATACATGTGCGTTCAGTACATTTCCCGCCGCAACTGAACTTTGGATGCAGTTACTGCGAGTGGCAGTTTAGAACTAATTACGAGTTGAAGCGACACATGGTTAGACATACAGGAGAGAAGAATTTCCATTGTCCAGTATGTGGGAAGTCGTTTTTGAGGAATAGGGCGCTGACGACGCACCTCAAGACACACCAAGACCTGAATAGTCGGTGGCGTAGTACCACCTTTAAGCAGAGAGGGCCGCGGTTGGCGCACGCCCACGATTTGACTGACTTAGTTCCTAGCGACGATGTGAAGATCATAATAAACGCGAACAATCATAGTTCCACTAACGAAACAGTTGGAATAGGCGTTAGACGCATTAGGAAGTTGAAAGAGAACGTAAGCGCGCGACAGATGCGGAGGCGCCGGCGAGCGAACAACGAACTCCCCGAAGAATCTGAGAAACGAATCTCAAAAACTATGATGCGACGGAACGCTATGATTCTACTCGAATGCTCCACTGCGTGGGCTTTCCGATGGTTCCATAGCGCCTTCTATTGCTCATATTGTGAAGCTAAATTTGTTGATGTACCGCTTCTCCGCGAACATGTGAAATTAAGCCATTTCAACGAACCGCCCACTAAAAGAATATTCTCGAAATTGACAGAAAATAATATGGTTAAAGTTGATGTGGCTGAACTCAGCTGTAGGTTGTGTAGTAGGATACTCAACGGTATTGACTCGCTCAAAGATCACTTGCTCATTCATGGCAAGACTCTCAATGTGGAATATAGTGATGGTGTCCTGCCTTTCAAGTTAGATGAAGAGAGCCTTACCTGCCAGATCTGTTTCGCCGAATTCTTGAGTTTCTCTAAAATGAACGAGCATATGAATACTCATTATCAAAACTACATTTGCGATTCGTGCGGCAAAGCGTTCGTTTCTAAGTCAAGGTTCAGGAAACATGTGCAGTCGCATGAGAAAGGCAGTTTTCCTTGCGGCGAGTGCGATGAGGTGTTGGAAACGCGAGCGGCCAGAATGTGCCATCGTATGCGAATACATAGAAAAGGTGTGCGCTACGCTTGTCCAAGATGCCCCGAAGTGTTCACAACGTATCACACAAGAGCCAAGCATTTAGTTGAAACTCATGCTCAACAGAGAAAAGAATACTACTGTAACGCCTGCGATAAAACATTTGAAACAAGCTCCAAAAGAGCTGGCCATATACGGTTGACGCATGCCAATATAGAGAAGAGACATTTTTGTCCTAATTGGTCCGTCGAACTGAAAAGTAAATGGAGACCGAAACGCAAATATAATGATCACAGAGATAATGCAGCGATCATTATTGAGTGCTCCAACGCTTGTCCGTTTAGGTGGAAGAGGGGTGCCTTCACTTGTGCGTTCTGCCCACTCTCGTTTGGCGATTTCATGGGTTTAAAGGACCATATAAAAGAACACCCCAATAGGATTGAAGCAATGCGACTAGCTAGGACCTTCGCTAACGTTAAGATAGATATAACTGATCTAAAATGTCAACTCTGTCTCACCTCAATGCCAGATTTAGACTCCTTAAGCGAACATCTATCTACGTGTCACAATAAATTGATTGTCAAAGACCGTGGTTTAGGTGTAACACCTTTCTATCTAACAGGGAAAGAATACAACTGCACTCATTGTGATGAAAGCTTCGAATTGTTCTCGAAACTAAACTCACATTTAAACAAACACTATCCAAACAGCATATGCTTTTTGTGCGGCAAAGCTTTCTCGACCATCCAAAGGTTGCAAGCCCATTTAGTTATACACGAGACAGCTAACGCACTACACCATAAATGCACTAAATGCGACCAAGTATTTGAGACTAGAGTCTTAAAGAATAGCCATTTAGCATTAGCTCACGGCCCAGAATACAGATACCGGTGTCCATACTGCAATGATTCTTTTAAAAGCTATGCTGATCGAGGGAAACACTTGAAGCAAGCACACGGCAAAAAGGTTGAGTATCCATGCAATTTGTGTCCAGCCGTCTTCGCGATGTGCAATCAAAGGACGAAACACATCCAGCAAGTCCATATTCGCCTAAAATCGTTTTCCTGCAACTACTGCTCCCATAAATTTGTGACGGCTGCACAGTTGAGAAATCATATGGTTAAGCACTTTGGTGAACGAAAGTTTCAATGTCAAGTCTGCAAGAAAGCGTATGCCCGCTCGAAAACTTTACGCGAGCATATGCGGATACACAATAACGATAAACGGTTTGTCTGTCAGTATTGTAATAATGCGTATGTACAGAAATGTAGCTTGAAAAGCCACATGAAGACGCACCACCCGTCTGCGGAGCTTTTGAAAAAGATTAAACTGCCTCATGCGTATTAA
- Protein Sequence
- MEAIGQRSDETFLFLGKRGLTSEDIVIKIEGDCQLQKIPKPKYIRSARAEARITTKKNATAIMNCWSFLPFRWKKNRFKCAYCEENFTDCFQLRDHIRICSVHHEMKDIYSKFKEMSLINVDVTGAICNFCSIPFTSISQLREHVIQHGLEFDTNHPDGVLPFSLDKESWQCFICPEKFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCNECGRIFLMRAARDSHKASAHPKAPRYECPHCNMRFDNYYDRINHMKNAHSEREVSYNCTHCEMSFKTSGKRAIHVRSVHFPPQLNFGCSYCEWQFRTNYELKRHMVRHTGEKNFHCPVCGKSFLRNRALTTHLKTHQDLNSRWRSTTFKQRGPRLAHAHDLTDLVPSDDVKIIINANNHSSTNETVGIGVRRIRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNAMILLECSTAWAFRWFHSAFYCSYCEAKFVDVPLLREHVKLSHFNEPPTKRIFSKLTENNMVKVDVAELSCRLCSRILNGIDSLKDHLLIHGKTLNVEYSDGVLPFKLDEESLTCQICFAEFLSFSKMNEHMNTHYQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECDEVLETRAARMCHRMRIHRKGVRYACPRCPEVFTTYHTRAKHLVETHAQQRKEYYCNACDKTFETSSKRAGHIRLTHANIEKRHFCPNWSVELKSKWRPKRKYNDHRDNAAIIIECSNACPFRWKRGAFTCAFCPLSFGDFMGLKDHIKEHPNRIEAMRLARTFANVKIDITDLKCQLCLTSMPDLDSLSEHLSTCHNKLIVKDRGLGVTPFYLTGKEYNCTHCDESFELFSKLNSHLNKHYPNSICFLCGKAFSTIQRLQAHLVIHETANALHHKCTKCDQVFETRVLKNSHLALAHGPEYRYRCPYCNDSFKSYADRGKHLKQAHGKKVEYPCNLCPAVFAMCNQRTKHIQQVHIRLKSFSCNYCSHKFVTAAQLRNHMVKHFGERKFQCQVCKKAYARSKTLREHMRIHNNDKRFVCQYCNNAYVQKCSLKSHMKTHHPSAELLKKIKLPHAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -