Basic Information

Insect: Abrostola triplasia
Gene Symbol: -
Assembly: GCA_946251925.1
Location: CAMIUJ010000056.1:449843-454282[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.7e-07 5.1e-05 23.6 0.6 1 23 193 215 193 215 0.98

2 14 0.0062 0.37 11.5 4.8 1 23 221 244 221 244 0.96

3 14 2.3e-06 0.00014 22.3 0.5 1 23 250 272 250 272 0.98

4 14 3.3e-06 0.0002 21.8 1.7 1 23 277 299 277 299 0.99

5 14 1.6e-05 0.00093 19.7 3.1 1 23 305 327 305 327 0.98

6 14 7.3e-07 4.3e-05 23.9 1.1 1 23 333 356 333 356 0.95

7 14 2.8e-05 0.0017 18.9 2.5 1 23 362 384 362 384 0.97

8 14 1.6e-05 0.00093 19.7 0.8 1 23 390 412 390 412 0.98

9 14 0.00027 0.016 15.8 1.8 1 23 418 440 418 440 0.99

10 14 7.6e-08 4.5e-06 26.9 0.7 1 23 446 468 446 468 0.98

11 14 3.6e-06 0.00021 21.7 3.5 1 23 474 496 474 496 0.98

12 14 0.065 3.8 8.3 2.9 1 23 502 521 502 521 0.95

13 14 6.6e-07 3.9e-05 24.0 0.9 1 23 527 549 527 549 0.99

14 14 0.0019 0.11 13.1 2.8 1 22 555 576 555 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.7e-07	5.1e-05	23.6	0.6	1	23	193	215	193	215	0.98
2	14	0.0062	0.37	11.5	4.8	1	23	221	244	221	244	0.96
3	14	2.3e-06	0.00014	22.3	0.5	1	23	250	272	250	272	0.98
4	14	3.3e-06	0.0002	21.8	1.7	1	23	277	299	277	299	0.99
5	14	1.6e-05	0.00093	19.7	3.1	1	23	305	327	305	327	0.98
6	14	7.3e-07	4.3e-05	23.9	1.1	1	23	333	356	333	356	0.95
7	14	2.8e-05	0.0017	18.9	2.5	1	23	362	384	362	384	0.97
8	14	1.6e-05	0.00093	19.7	0.8	1	23	390	412	390	412	0.98
9	14	0.00027	0.016	15.8	1.8	1	23	418	440	418	440	0.99
10	14	7.6e-08	4.5e-06	26.9	0.7	1	23	446	468	446	468	0.98
11	14	3.6e-06	0.00021	21.7	3.5	1	23	474	496	474	496	0.98
12	14	0.065	3.8	8.3	2.9	1	23	502	521	502	521	0.95
13	14	6.6e-07	3.9e-05	24.0	0.9	1	23	527	549	527	549	0.99
14	14	0.0019	0.11	13.1	2.8	1	22	555	576	555	576	0.95

Sequence Information

Coding Sequence: ATGTCTGTTTATTGGAATACAAGTGGTTTGTGCCGTTGTTGCCACGCTGAAGGCAGTTTTAAGACCCTAAATGTGTTCGCAGCCGAATCTGTTGACTGTTATGCTTCACTAAGAGAGACTTTCGATATCATACTAAATCCCTTGCCAAACGACAATGGGTCGTACAGCATCTGCAGTATATGTGAGCCGCGGTTACGAGATGCGGTTCACTTCAAGAAGCAGGTCATGCTCTGTGAAGATAAGCTGAAACAGTACTTGTATGACTGCGGATTTAAAGATGCAATGACTTTAGAGAAAGAAGTCAAATATGAACTAGAACAAAATGGAATGAAAGAAGAATCCAGTAACATTGACGATCAAGACAGAATAGACTTGAAATATGAAGACGACAGGCTCCCAGAGATAGAGATCTTCATCCAGCCGGTAGAGGACGACGACCAGCCTCTCTCCGTGCTGAGGGGCTCCAGGTCGAGGGCGGAGCACCTCGATGACACGGAGCCCGACGCCGACTGGGCGGCGCCTCCGGACTTGAGCGATGCCGAAGACCACAAACCGAAAAGCCAGAAGTCCAAAAAATACTCCTGCGATATTTGCCAAAAGAAATTCTCTTACAACGGCTCTTTAGAGGTCCATATGAAGGAGcacagcggggagaagtccttcagttgccacctctgtggcaccacgcataccaacaacaaggaactgaccaagcacatcactagccaacacgtggtcgatggtaagtacccctgcactatctgcgaaaaggtcttcgagaaagcaaggctcctcaaaaaacacgtcaaaactcacttcgaagagaaatttaagtgcagcgagtgtgagaaggaatttcagaggaagaaaggcctgaaggaacacatgaagatacatacgggtgaacggaaatactcttgtacagtctgcaacaaagctttcgggcataaccagacgctaaagtctcacatgtacacgcacactggtgagaaaccttatgtctgcgatgtttgcggtcgccggtttcctcagcggacgcatttgaaacgacatatttttatcatacataccggtgtcaagcctcattcttgcaacgtctgtcaaaagcagttctccagcaagagttatctggcgatacatgagcgccagcatactggcgaaaagccttattcttgtgaggtttgtaagaaagatttcactgcgtacacgactttgaaggtccatatgagagtgcacaccggcttcaaaccgtacacgtgcggcttttgcagccgacagttcgctcaaatggccagtttcaagctccaccagcgcactcacacaggggaaaagccattttcttgtaaaatttgtaaaaaacctttttcggacaatgggtatcttaaaattcatatgcgcgtgcattccggggagaagccattttcgtgtgaggtatgtaagcggtgttttagggagactggtcagttgaagcggcacatgcggatacacaccggcatcaagccttacacgtgtaaaatttgcaacaaacaaattgggaacttgtccaaacatatgagagtacattcagaggacaggccttacagctgtaatgtgtgtaataaacagttttctataaatgggaatttgaaattgcatatgcgcatgcatacgggagagaagccattttcctgtgagatgtgcagcagccagttcactcaaagcagtggcttgaaaagacacagatgtactaatggtggaaaaAGTGATATTTTGAGTACTTAA
Protein Sequence: MSVYWNTSGLCRCCHAEGSFKTLNVFAAESVDCYASLRETFDIILNPLPNDNGSYSICSICEPRLRDAVHFKKQVMLCEDKLKQYLYDCGFKDAMTLEKEVKYELEQNGMKEESSNIDDQDRIDLKYEDDRLPEIEIFIQPVEDDDQPLSVLRGSRSRAEHLDDTEPDADWAAPPDLSDAEDHKPKSQKSKKYSCDICQKKFSYNGSLEVHMKEHSGEKSFSCHLCGTTHTNNKELTKHITSQHVVDGKYPCTICEKVFEKARLLKKHVKTHFEEKFKCSECEKEFQRKKGLKEHMKIHTGERKYSCTVCNKAFGHNQTLKSHMYTHTGEKPYVCDVCGRRFPQRTHLKRHIFIIHTGVKPHSCNVCQKQFSSKSYLAIHERQHTGEKPYSCEVCKKDFTAYTTLKVHMRVHTGFKPYTCGFCSRQFAQMASFKLHQRTHTGEKPFSCKICKKPFSDNGYLKIHMRVHSGEKPFSCEVCKRCFRETGQLKRHMRIHTGIKPYTCKICNKQIGNLSKHMRVHSEDRPYSCNVCNKQFSINGNLKLHMRMHTGEKPFSCEMCSSQFTQSSGLKRHRCTNGGKSDILST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00172047;
90% Identity: iTF_00000535;
80% Identity: -