Atri017352.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000087.1:169996-173909[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 1.2e-06 28.3 0.0 1 42 18 59 18 62 0.88 2 2 5.8 4.3e+03 -2.3 0.0 18 29 621 632 621 633 0.91
Sequence Information
- Coding Sequence
- atgccaagaacttatagtaagagattaggtgctcgggcctacaaaaattacagtgaagagcggttggagcgagcaataacagctgttgtagaaaatcgcatgacgttgcgcggggcagctgaaaagtttaatataccttacggtacgattttcaataagtaccatggaaaatttacgaagaaaccgggagagcaaccagtattttctgaaaatgaggagaaatccatattgcgatcatgcgctaaatgtgccgattggggatacccgcttacaattttagatttgcgcatgttcgctaaaattcttttggacagacaaggtagaacagtctccaaatttccaatcaattttcctggacaagactgggcgtactcactactcaagaggcacaaagatgagtattctcaaagggttttcactaacatcaaacgagcacgagccgcggtatcccctgaaagtatcgaggagtatttcaataatcttgaaaatacattgaaagacattcctgcatctaatatttttaattacgatgagtctaacctgagtgatgatcccggaaagaaaattggtatatatcggagaggtgtgaagtacccagagaaggcaatgaatttttcaaaaagtgccacatctgttatgatttgtggttctgcagatggtgtgcttctaccaccttatgtcatctacaaaagtttacatctctacgatacctggaaggagagagctccatgtggttcaccttgttgtgatcagtcttgttgttcagcaggatcgcgattcaatcgtaccgttagtgggtggatcgacgcaccaacattccgagactggtttgtgtcttcctttatgcctcatgcaagaagattacctggccgcaaagtccttattggagataatctgtcgtctcatttggatgaggaggtcataaagctctgcagtgaaaataacatagattttgtttgtttggtaccccactcgacacacttatgtcaacctctggatgtggctttctttcggcccatgaaaacagcctggcgacaaatacttaccaACATAAGCTCTGGCGTTAAGAGAAATATGGCAAGTGGATTTTGCGCTACGGGCATTCATCCTTTTAACAAGCAAAAAGTTCTTGATCGTCTGCCGAAAGAAGACATCGGAGAACAGGAAATTGAAAATACTTTGACAGATTTTTTGAAGGAGTCGAGATATGGAAGTGCTTCAGACAGACCTGCAAGAAAACGAAGACGTCTGGATATAGTTCCTGGCAAGAGTATTGGAACGCGAGAGGAAACGTCCGCAGTTCAGCAAAACAATATTCCGGTAGACGACTCGACAGGTGAACCAAGCACGTCCCAAACAGAGGATATCCAGGATATACGGCTAAATGAGAGTGACTCTGAGGAAAACCCGATAGAATGTGAAGATGAGAGGACAGAATGCAACGTGGGAAGATTTATATTAGCAAAATTCTTCTCAAGACGTGGCAAAAAAACGTACAAATATGTTTGTCAAATTACTGAGAAGGAACCCTTACTTGTAGAAGGTTTTAAGTCAGCTGGAACTAAAAGAAGATTTGAAAGAATCCAAAATGACATTTCTGAAATTGATTATATTGATATTGTGTCTTTTTTACCAAAACCTGTTGAAGAAGAGCGGCACCACTTGCAGTCGCTCCGTCTTCGCGGGGTTCTGAACCCCCAAGTCCCATCGCCACGGACGATCGTAGCGGCGACACAGCGGCTACTAGATCATGGACAGTTCCATACACCGGCACATGCACAGGGCAGAGGTCGACCGGCCGTTATTTTGCCAGCGCTCGACGAGGAGATCATCGAGTACTTCGAACGGGATCCTCGTCGAAGTACGCGCCAGGCCGAGGCTCGGTTTGGCGTAAGCCAGTACTACGTCTGGAAACTACTGAACTCTGAAGGACAGCATTCTTATCATTATCGCGGAGTTCACGCTCTCCACGGAAATGACCCCCAGAACAGAATTGCGTTTTGTGGAACCTACCTGGAAATGATACGCAACATTATCCCGGACTTATTGGACGACCTTCCGCTAGCGGTGCCCATGGACAATCTGTACTATCAGCATGACGGGTGCCCGGCTCATTATCACCGCGCCGTGCGAGAGCACTTGCACTTGGTGTTTCCCCAGCGCTGGATCGGACGCGGCGGGCCAGTGCCTTGGCCACCAAGAAGCCCGGACCTAACTCCGTTAGACTTTTACTTGTGGTCTGAGCTCAAGCGCCTAGTGTATCGTGAGGAACACGAAACTCGCGACGCGTTAGTAGCTGCGATAGTGGACGCTTTTGATATCGTACGCAGGGACAGAGACACCTTATTTAAATTGAAAGAAAACCAATTAGTATAG
- Protein Sequence
- MPRTYSKRLGARAYKNYSEERLERAITAVVENRMTLRGAAEKFNIPYGTIFNKYHGKFTKKPGEQPVFSENEEKSILRSCAKCADWGYPLTILDLRMFAKILLDRQGRTVSKFPINFPGQDWAYSLLKRHKDEYSQRVFTNIKRARAAVSPESIEEYFNNLENTLKDIPASNIFNYDESNLSDDPGKKIGIYRRGVKYPEKAMNFSKSATSVMICGSADGVLLPPYVIYKSLHLYDTWKERAPCGSPCCDQSCCSAGSRFNRTVSGWIDAPTFRDWFVSSFMPHARRLPGRKVLIGDNLSSHLDEEVIKLCSENNIDFVCLVPHSTHLCQPLDVAFFRPMKTAWRQILTNISSGVKRNMASGFCATGIHPFNKQKVLDRLPKEDIGEQEIENTLTDFLKESRYGSASDRPARKRRRLDIVPGKSIGTREETSAVQQNNIPVDDSTGEPSTSQTEDIQDIRLNESDSEENPIECEDERTECNVGRFILAKFFSRRGKKTYKYVCQITEKEPLLVEGFKSAGTKRRFERIQNDISEIDYIDIVSFLPKPVEEERHHLQSLRLRGVLNPQVPSPRTIVAATQRLLDHGQFHTPAHAQGRGRPAVILPALDEEIIEYFERDPRRSTRQAEARFGVSQYYVWKLLNSEGQHSYHYRGVHALHGNDPQNRIAFCGTYLEMIRNIIPDLLDDLPLAVPMDNLYYQHDGCPAHYHRAVREHLHLVFPQRWIGRGGPVPWPPRSPDLTPLDFYLWSELKRLVYREEHETRDALVAAIVDAFDIVRRDRDTLFKLKENQLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -