Atri004833.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- -
- Assembly
- GCA_905340225.1
- Location
- HG996516.1:2964363-2972075[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.33 24 5.9 0.7 1 19 218 236 218 241 0.90 2 9 0.0035 0.25 12.2 3.9 1 23 338 360 338 361 0.94 3 9 1.5 1.1e+02 3.9 0.7 1 9 365 373 365 376 0.89 4 9 0.085 6.3 7.8 0.5 2 23 383 403 383 403 0.96 5 9 0.0043 0.31 11.9 2.9 1 21 409 429 409 434 0.94 6 9 2.3e-05 0.0017 19.0 0.8 1 23 442 465 442 465 0.96 7 9 0.00026 0.019 15.7 2.0 1 23 471 494 471 494 0.97 8 9 3e-05 0.0022 18.6 0.3 3 23 506 526 505 526 0.96 9 9 3.7e-05 0.0027 18.4 2.0 2 23 533 555 532 555 0.96
Sequence Information
- Coding Sequence
- ATGGATGACTGCCCTGAAATTGTGATAAAGAAACTGTGTTGTACGTGTCTGTGTAAAGACAGAAAGTTATATCAATTGTGTAGACTACCTGATGGAGTCAATAATTTATATTCGTTGTTATCTTTCGACTCTGAAGCTTATAGGGAGGGCTTCTTCAAAGACACAGCAAGTCTTTACATCTGCTGGGAGTGTCGCGCCATCATGTGCAGGCTCTCCCGGTTCAGACAGCAGGCATGTACTGCACAGAAGCAGCTGACTATGATCGCTGACGGGCGGACAGATATTAAAACCAATCACAGTTGTCTATCTCGCCTCTCTGTCTACCACACAACATCCTGTATCATTGTCAACTCCAAAGCAAACGAGATAACAACCGATAACTTTATAGACTGCGGTCCCATCGCTGACATCAAAAGTGAAACAGAAGAAGACATACCGCTATCAGAACTACACAACAACTATATAACTGACGAAGAACTAAGAAACGATGGAGAAGATTTGATATTCCAGCTCAAAGAAGTTAAATATAAGAAGAAGAAATTTAAAAAGAAGAAGAAAAAAGAGTATTTTAGTACAGTATTGGTTGATGAGGTGGAGTTAGAAGAAGTGAGAGTGAGTAAGAGATTGGAAGCAGGTTATTTGGAAGCAGAGTTTAAGTGCGAGAGCTGTGTTCAAGGATTTGGGAGTCAGGTGGAGTTAGATAGACATTGTGAGATGTTGCATACTGAGAAACCGAACCACGTGCAGTGTGACATATGCTTATCTTACATACGGGTGGAGACACACAGAGAGCACAGGGAAGCACACTACCACAAGTATCTGTGTCAGTTTTGTGTGTACACCGCCTTTAGTTTAGACGACATGATGGACCATCTCGCTATTGGGCATATAAAGAACCTCACTGTACCAGTTAAAAGGAAAAAGAGACAGCGAAAGTCAGAAGTGTTAAAATTAAAACCAGGCACCAAACTCCGGACGCCAGCCATGACAGACAAACGGACGCCCTACGGGTATCTATGCACTGAGTGTAACAAATATTTTGAGAACAAGAATCAACGATGGAAGCACGTGCAGCGCCACCACCGAGAGGGATACAAGTGCGGCACGTGCGGGAAGAGGCTCCACCAAGGTCCGCTACCTCGAGAAGAGTGCCCGGTCTGCCACAAGATGATCAGAGTGGACCTACTCAAGATCCACTCGCGAATCCACTCCGACAGGCAGACGTTCACGTGCGTGGAGTGCGCCAAGTGCTTCGTCAGCAGGGCGTCGTATGAGCATCATCTGAAATACACGCAGGCGCATGCGCAGAACGATATACTTAAGTATAAATGCACGCTATGTGACAAGGGCTACCGGTCGCGCGGCGAGCTGAGGGACCACGTGAACTACCAGCACATGGGCAAGACGCAGCACAAGTGTCCCGTGTGCGGCAAGGCGCTTGCCACCCGTCGCTGCATCACGCGACACGTGCGACGCGCGCACGACGGCGTCAAGGAGAGCGCGCGCGACAAGATATGCCAACAGTGTGGAAAGGCCTTTAGGGATAAAAAGGGCCTACGCGAACACGAACTAATACATACAGGTGAACGACCTCTCTCGTGCGAGATCTGCGGGTGTACCTTCAGGCAGAGCGCCTCGCTGTACACCCACAGGAAACGGGTGCACAAGATATACCCCAACACGAAGCGAGTGACGCTACTGGAGCAAGCGACTTGA
- Protein Sequence
- MDDCPEIVIKKLCCTCLCKDRKLYQLCRLPDGVNNLYSLLSFDSEAYREGFFKDTASLYICWECRAIMCRLSRFRQQACTAQKQLTMIADGRTDIKTNHSCLSRLSVYHTTSCIIVNSKANEITTDNFIDCGPIADIKSETEEDIPLSELHNNYITDEELRNDGEDLIFQLKEVKYKKKKFKKKKKKEYFSTVLVDEVELEEVRVSKRLEAGYLEAEFKCESCVQGFGSQVELDRHCEMLHTEKPNHVQCDICLSYIRVETHREHREAHYHKYLCQFCVYTAFSLDDMMDHLAIGHIKNLTVPVKRKKRQRKSEVLKLKPGTKLRTPAMTDKRTPYGYLCTECNKYFENKNQRWKHVQRHHREGYKCGTCGKRLHQGPLPREECPVCHKMIRVDLLKIHSRIHSDRQTFTCVECAKCFVSRASYEHHLKYTQAHAQNDILKYKCTLCDKGYRSRGELRDHVNYQHMGKTQHKCPVCGKALATRRCITRHVRRAHDGVKESARDKICQQCGKAFRDKKGLREHELIHTGERPLSCEICGCTFRQSASLYTHRKRVHKIYPNTKRVTLLEQAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00001519;
- 90% Identity
- -
- 80% Identity
- -