Atri007467.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- -
- Assembly
- GCA_905340225.1
- Location
- HG996513.1:2321751-2326767[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.014 1 10.2 1.3 3 23 30 51 28 51 0.91 2 16 0.53 39 5.3 1.3 2 23 75 97 74 97 0.91 3 16 0.035 2.6 9.0 0.8 2 23 119 140 118 140 0.96 4 16 0.0021 0.15 12.9 0.2 1 23 144 166 144 166 0.98 5 16 0.29 22 6.1 1.8 2 23 172 194 171 194 0.92 6 16 0.099 7.3 7.6 0.7 2 23 202 224 201 224 0.92 7 16 0.14 10 7.1 0.8 2 17 232 247 231 248 0.92 8 16 0.65 48 5.0 0.3 1 23 339 362 339 362 0.89 9 16 0.017 1.2 10.0 0.1 2 23 388 410 387 410 0.95 10 16 0.0025 0.18 12.6 0.1 1 23 536 559 536 559 0.91 11 16 0.028 2 9.3 0.1 2 23 585 607 584 607 0.96 12 16 0.035 2.6 9.0 0.4 2 23 630 651 629 651 0.97 13 16 0.14 10 7.1 0.5 1 23 655 677 655 677 0.94 14 16 0.02 1.5 9.7 2.0 1 23 682 705 682 705 0.88 15 16 0.023 1.7 9.6 1.0 2 23 713 735 712 735 0.89 16 16 0.00017 0.013 16.2 0.9 2 23 743 765 742 765 0.94
Sequence Information
- Coding Sequence
- ATGAGGAAGAAATCCACGGATTTAAAAACGATTCTTTTATATTCGAATGCAAGTTTAATAAGGAACAAAGATGGTCACGGATACGGCTGCAACTTCTGTCCAAAGAAATGCGTTGACCCAAAGAAATTGAAAGCACATTTTCTAGAAGAACATTCCGATATCCAATCGCTAAAGATGCCAAAATCTTTCGAATTTATAACCAAAGTCGACATAACGAAATTAAAATGCAAAATTTGCGACAAACGGATATTAAAATTACACGATTTTGTTACACACCTGGAAACGGATCATAATTTAAAGATGGCGTCCGATATGAGCGAGATAATACCGTTTAGATTCGATACTGAAGAACTAGAATGTGCTATATGTGGAACTAAATATGCTACGTTCAAAATACTTCAAGAACATATGCACAAACATTACAGGAATTATATTTGTGATGCTTGTGACGCGGGTTTCATCACAAAACGATTACTTGTCTCGCATAAACGGAGGCACGGAAAAGAGGAAATCAAATGTAGAAACTGCGAAAAAACCTTTGATAGTGACTTCAAAAGGAAAGCTCACGAACAGAGAATGCATTTAGGCCTCAAGAAACGTAACAAATGTGAGAATTGCGAGGAAAAATTTGACGATTACTGGACGAAAATGCGACATATGGTGCAACAACATGGCGCTCCAGCTGTAACCTCAAAATGCACAGCGTGCGAGCGCACTTTTACCAACCGACGATCGCTTACACATCTACGCTCAAGCACTAGGGAACAGCGGGATTCTTCGCCGATATACTGCGATGAAGATGAAAAAAAGATCACTTTAGACCGGAAACTGAACTTCACATCCTTTGTGACGATAAGACCAGTTGGGAAAACCACTATACCTTGGGTCCGGGAGCAACAGAAGAAGATAGCGCAAGAAAGACGTTTGACCGAGCTAGACTGGCAGTTTGACAACATCAGAACGATATTAAAGTGCTCCAACGCATCTCCAATTCGTTGCCGCGTGGGCACGAGGTTCGCTTGCAGCTACTGCCTCGATCAATTCCAGAACCCGACGGAATTGAGAGCTCACTCATCTCAAGACCACATTAACGATAGAGCAGAATTCTTCAACGCCAGATCTTTGTCCCGACACATCGTTTATTTAGACATTACTGGGTTAAAATGCAAGATTTGCGATCAAAGTATCGAAGGACTTGATCAGTTGATGGATCATTTGAAGGAGGTCCACGATGAGTTGATTCATAAGCAGATTAAGAATCAAATTGTGCCATTTAAATATGAGGGAAGAAAGATTCTGTGTGGAGTTTGCGCGAATGATATTGGAGAGTTCAATGATCTTCAAGAACACATGTCTGAACATTACAGGAACTATGTGTGTGGGTTTTTTCCACCGAAAAAGACAAAGAAATTCATCTTAAAGATAGAAGCGAATGGAAAAAGAAGGGACGTCAAGAAGAGACAAATTATCGAAATACAGCCGAAGAAACTAAAAACATCGGTGAAACTGAAAAGAAAAACTGAAGTCGAAAAACACAAAGACAATATCAGAACTATTTTATTACATTCCAACGCTACGCCAATAGGAAGGTACGCTGGCATAGGATACACGTGTTCCTTCTGCCCTCAACAATACGCAACGCCCGCCGAACTAAAAACTCACTCGATTTTAGCGCACGAAGAATCTAAATCGATTTTCATGGAAGATAAAGCTATGCACAACTATATCGTTAAGCTGGACATCACTAATTTGAAATGTGACATCTGTCAAATGCGCATAGACACACTAGAGCAATTAGTCGACCATTTAAAATCTATGCACGATAAGTTTTTCCATGTTGGCATCAAAAATCATATTCTGCCATTTAAATTCGACACTGATATGGTCAAATGCTTATTTTGTGGTAATGATTACAGTAATTTCAAGGTATTATTAGAACATATGAATACTCATTACAGAAATTATATTTGCGAAGTTTGTGATAGCGGATTTGTTACTAAAAAAATATTGCAGACTCATTCCTATAGACATAAAACTGGCGTATTCAACTGCTCGTATTGTCCTAAAGTATTTAATAATCATATTAAGAAGAGGGACCATGAGAAAGCTGTGCATATATGCTTTAATAAAAGAAACAAATGCGGGTACTGTGGGGAGAAATTCACAGATTACACAAAGAAGAATAATCATGAAGTTAAAATTCATGGCGCGAAACCTGTGGTCTTAAAATGTCAAGCTTGTGACAAGACTTTTGACAACCAGAGGTCATTGACAGTACATACAAAAGCGTACCACTTGATGGAAAAACATATTCCTAAATAA
- Protein Sequence
- MRKKSTDLKTILLYSNASLIRNKDGHGYGCNFCPKKCVDPKKLKAHFLEEHSDIQSLKMPKSFEFITKVDITKLKCKICDKRILKLHDFVTHLETDHNLKMASDMSEIIPFRFDTEELECAICGTKYATFKILQEHMHKHYRNYICDACDAGFITKRLLVSHKRRHGKEEIKCRNCEKTFDSDFKRKAHEQRMHLGLKKRNKCENCEEKFDDYWTKMRHMVQQHGAPAVTSKCTACERTFTNRRSLTHLRSSTREQRDSSPIYCDEDEKKITLDRKLNFTSFVTIRPVGKTTIPWVREQQKKIAQERRLTELDWQFDNIRTILKCSNASPIRCRVGTRFACSYCLDQFQNPTELRAHSSQDHINDRAEFFNARSLSRHIVYLDITGLKCKICDQSIEGLDQLMDHLKEVHDELIHKQIKNQIVPFKYEGRKILCGVCANDIGEFNDLQEHMSEHYRNYVCGFFPPKKTKKFILKIEANGKRRDVKKRQIIEIQPKKLKTSVKLKRKTEVEKHKDNIRTILLHSNATPIGRYAGIGYTCSFCPQQYATPAELKTHSILAHEESKSIFMEDKAMHNYIVKLDITNLKCDICQMRIDTLEQLVDHLKSMHDKFFHVGIKNHILPFKFDTDMVKCLFCGNDYSNFKVLLEHMNTHYRNYICEVCDSGFVTKKILQTHSYRHKTGVFNCSYCPKVFNNHIKKRDHEKAVHICFNKRNKCGYCGEKFTDYTKKNNHEVKIHGAKPVVLKCQACDKTFDNQRSLTVHTKAYHLMEKHIPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -