Atri021431.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- -
- Assembly
- GCA_905340225.1
- Location
- HG996490.1:11631836-11637395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0004 0.029 15.1 2.6 1 22 260 281 260 281 0.96 2 12 0.12 8.6 7.3 0.1 6 23 304 321 302 321 0.94 3 12 0.92 67 4.5 0.0 2 23 328 349 327 349 0.94 4 12 6.8 5e+02 1.8 4.2 1 23 358 381 358 381 0.82 5 12 0.0022 0.16 12.8 2.5 3 23 389 409 388 409 0.98 6 12 0.054 4 8.4 0.7 1 23 414 436 414 436 0.93 7 12 1.1e-06 8.1e-05 23.2 2.8 1 23 442 465 442 465 0.97 8 12 0.00087 0.064 14.1 3.7 2 21 472 491 471 492 0.95 9 12 0.00019 0.014 16.1 0.7 2 23 500 521 499 521 0.96 10 12 0.00046 0.034 14.9 2.0 1 23 527 549 527 549 0.98 11 12 4.7e-05 0.0034 18.0 0.6 1 23 555 577 555 577 0.96 12 12 1.1 81 4.3 7.1 1 19 583 601 583 606 0.88
Sequence Information
- Coding Sequence
- ATGTCTTTGATTGATAAAACATTCAAAATAAATACTTGTCGAATATGTCTTGATTCAAAGTGCTTAGATATGGTGTTACTAAATGAAGAAAATGAATTGTTAAATCTCTATGTATATTGTTTTGGCATAACGTTATCAATTGAAGATCAGCCACGGTTACTCTGCAGAAAGTGTGCCAATAATGTCAAAAGCTATTCTAAATTTAAACAGCAGTGTTTAAAATCTGATAGTCTGTGGAAATTAGTTTGTGTTGATGTGAAACGGCATACTAATATTACAATACCGCTTGAAAAAGTAATACATGAAAGTATTAAGAACAACACCCAAAATGCTTACAATGATGTTGATGGGGTGCAAAGTAAATATGAGTTTATTGAAAACTCATTTAATGGTGACTCATATTTGCCCAAAGTTGAAGATAAAAAAGCTATCAATTCTATTGAAATGGAACATACAATAATAAAGGAAGAAATTCCTGAAGATAATGGAACTGAAGAATTGACTTCTATTGATATAGAGCTGGAATCAGAAGATGATGAATATTGCAATTTAAAAACATCACCAATTAGCTTTAATGCACCCATCGCAATAAACTCTCTTAAGATAGAAATTATTCCCGAAGATCTAGAAGTAAATCCCGAAAAACAAGAAATAAATTCTAGTAAGGTAGAAATAAGTTCTAATAACGAATCTATAAACAGTGCTAATAATAATAATGCTGTTGAAGAGGTTAGTAATGAGAACCCTAAAACCAAAATCAAAACCAATCATAGAAGTTTTAAATGCAAGATATGTAAAAGGAAATATGCATCAAAAAAATGGTATCGTAAGCATGTGAAAACATGTCGTGCAGAAAGAGTAAAATGTCGGAGTCCTAATCAACAAAATGATTATTTTAATTATGGTCTGTGTAAAATGACTTTTACGAGTAATAGTGATGCGTTCAATCATGTAAACGAACATTGGTCGAGTAATAACTTAGAGTGCAAGTTGTGCGACTTTGTTGGATCCGATCTGGCTGCTATAGCTGCTCATAGGTATTCTCACTATCCGTCAAAACATAAATCACGTTATTATTGTCATATTTGTGAAAAGCGTCATTTTTCATCAGTAGCCTTGCAGTTTCACTATCGGCAAGATCATTTGAACAAGAATGGAGGTTTATGCTCCGTATGCAAGAAGGAATTCACTAAATTGAGGACATGGAAGAAACACGAGAAAACACACACTGCTGCTGCGTATATATGTGATATTTGTGGGCACAGGTTCTTGTACAAATATCTTATAAGAGAACACGTGATGGGCCACAAAGGCCTGAGCAAGTTCGTCTGCCACATGTGCGGCAAGATATTTAAACGTTCCAAATATTTGCAACTTCACTTGAAATCTGTACATTCGAAAACAGGTCCAGTGAAGTGTTCACATTGCAACAGAATGTTCAAAAGTCTCCACACTCTACACATTCATCAGAAGATAATAGCCAGAAACAAGAAATTGAAATGTAAATATTGCTCCAAAGAATATCCTTCGGCGTCGTTCTTGAAGTCGCACTTGGTTATGCATAGCGAGGAAAGACCGTTCAGCTGTGATATTTGTGGACTGAGTTACAAAGCAAAGTGCCGTCTCAAGGTGCATATGTTAAGGCACACAGGGTTTATGCCGTACAATTGCGAGGTGTGCACAAGAACTTTCGCGACCTCCACACAGCTTAAAGTGCATTCTTCAGTCCACACCGGCGTCCGAGCACACAAGTGCTTGCATTGCGACAGAACATTCCACACGAAAAAGTTGGTCGCAGACCACTGCGCGCGACGTCACAAGATGGCGGAAACAAATGAATAA
- Protein Sequence
- MSLIDKTFKINTCRICLDSKCLDMVLLNEENELLNLYVYCFGITLSIEDQPRLLCRKCANNVKSYSKFKQQCLKSDSLWKLVCVDVKRHTNITIPLEKVIHESIKNNTQNAYNDVDGVQSKYEFIENSFNGDSYLPKVEDKKAINSIEMEHTIIKEEIPEDNGTEELTSIDIELESEDDEYCNLKTSPISFNAPIAINSLKIEIIPEDLEVNPEKQEINSSKVEISSNNESINSANNNNAVEEVSNENPKTKIKTNHRSFKCKICKRKYASKKWYRKHVKTCRAERVKCRSPNQQNDYFNYGLCKMTFTSNSDAFNHVNEHWSSNNLECKLCDFVGSDLAAIAAHRYSHYPSKHKSRYYCHICEKRHFSSVALQFHYRQDHLNKNGGLCSVCKKEFTKLRTWKKHEKTHTAAAYICDICGHRFLYKYLIREHVMGHKGLSKFVCHMCGKIFKRSKYLQLHLKSVHSKTGPVKCSHCNRMFKSLHTLHIHQKIIARNKKLKCKYCSKEYPSASFLKSHLVMHSEERPFSCDICGLSYKAKCRLKVHMLRHTGFMPYNCEVCTRTFATSTQLKVHSSVHTGVRAHKCLHCDRTFHTKKLVADHCARRHKMAETNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -