Atri014911.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- -
- Assembly
- GCA_905340225.1
- Location
- HG996512.1:7689817-7692514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.83 61 4.7 0.2 1 20 167 186 167 188 0.92 2 20 1.1 79 4.3 0.4 8 21 204 217 203 218 0.89 3 20 0.15 11 7.0 0.5 2 23 223 244 222 244 0.91 4 20 0.0064 0.47 11.3 0.9 1 19 249 267 249 272 0.94 5 20 2.7 2e+02 3.0 0.2 2 12 280 290 280 294 0.85 6 20 0.072 5.3 8.0 0.9 2 23 330 352 330 352 0.96 7 20 0.00041 0.03 15.1 1.4 1 23 358 381 358 381 0.97 8 20 1.8 1.3e+02 3.7 0.2 2 21 385 403 384 404 0.84 9 20 0.024 1.8 9.5 0.4 1 23 412 435 412 435 0.93 10 20 0.0094 0.69 10.8 0.9 1 23 440 463 440 463 0.93 11 20 0.00078 0.058 14.2 0.4 2 23 476 497 476 497 0.97 12 20 0.0024 0.18 12.7 1.2 1 23 503 525 503 525 0.98 13 20 0.067 4.9 8.1 0.4 2 23 531 551 531 551 0.96 14 20 0.00027 0.02 15.7 1.0 2 23 557 578 557 578 0.97 15 20 0.035 2.6 9.0 0.2 2 23 583 603 582 603 0.95 16 20 6.6 4.8e+02 1.8 3.2 2 23 622 643 621 644 0.93 17 20 2.4e-05 0.0018 19.0 3.1 1 23 650 672 650 672 0.98 18 20 0.00033 0.024 15.4 1.3 2 23 679 700 678 700 0.96 19 20 0.044 3.2 8.7 0.8 1 23 706 729 706 729 0.93 20 20 0.015 1.1 10.2 2.9 2 23 735 757 735 757 0.97
Sequence Information
- Coding Sequence
- ATGGACTGTTTTAAATTGAAGCTAAAAAATGTTCTTCACAGTGCTCAATTTTGTGGGATCTGTTTAGAAAATGAAAACAAAATAAGCGCCCTTGATGAAAGTTTACAAATTGTTGTAAACCAACAACGTTATAGTAAAACACTAAGAGATTTAATTAATGTTGTTTTTAAAGATCCTGAAAACATCATAGCAAGTTCACAGATATGCAATAATTGTACAGAAAAGCTTATCCAGTCATACATTTTTATTAAAAACACTGAAGAATCATGTAAGATGATTGAACACTATGTTAATGATTTATTCAACAAATCAGATGATATTTTTAATCATTTGTCCAATGCAAGTACAGAGACCTCAAATGTGGTTATTGTATTAGAAAAAAAGATTAATGGACAAGAAGAAGTATTTTTAAAAGAGGAACTGAAGAATGAATCAAAAAGAAATAAAGAAAAAAATTGTGATGTGAAGAAAGAGGTACCAAAAACAAAGCATTCCAAATTCAAATGTTTGGACTGCAATATGAAACTACCCTCTGATAGAGCTTTAAAGTTACACAAAGTGAAATGTAACAAAAAGGTACAATTACAGACAAGTAGAGGGGGTATTAAAAAAACATTTAGAAACAGAAGGTACTTGAATGCACACTTCAAAGTGCCTTCAAATGTTAAATGCAATGTGTGCAATAAATTTATCGACAACAGTGACTTTTTAGAACATGTTATGAAAAATCATAAAGATTCTGTGCACAAGTGTTTAAAATGTGGTGAGGTGTTTTATTCTCTAAATACTTTACAGATACATGATAGCATTTACCATCCAACTGAAGACAATAAACCTCAATGTGTGATGTGTCAAAAGAACTTCAGTAAAGAGGAAATGAGGTTCCATGATTGCAAGTTTGGCTGTCCGGAATGTTCTGAGACCCCTTGTATGCACTACAAGTACTTAATATCGTATAAAGAACAGAGGCTGAATAATTCAAAAGCTAAATGCTTGGATTGTGACTATATTTGTAGGAGAAAAGAGGTTCTGTTGGGACATGTGAATAGGGAACATTTAAATCACCATCCTTACGCTTGTGATAAGTGCGGACAGCAGTTTTATTCTAAAGTTGTTTTGAGAACTCACATTCATACACTTCATGATTTCCTTATATGCCAGTATTGTGATTCAGAGTTCAGTGTTAGTACCTATAACAATCATGTTAAATCTTGTAAGGATGTGAAAAGGAAGTTTTTATGCGACAATTGTGCTGCGTCATTCGACACCTTCGAAAAACTGATGAATCATATCAAACTAAGACACAGCAAGGATACTTTTCCTTGTAGCCTATGCAACAAAAAGTTCGTAAACGACTCGAAAAGAAAAGAGCATCTAGTCAAAGTTCACAGTGGCATCCAAAATAAGAAAAAAGTTTTCAATGGCGAATGTGTCGTGTGCCAGGTAAAATACGACACCAAAAGAGACTTAGTACAACATATGAAAACTCATGGCCCAAACACTATATACCCTTGCAGGATTTGTAATACTGAATACGAGACATTACGACAATTCCGGGCCCACAATCGGAAACATAACGGACCTTTCGCAACCTGCGAGATTTGCGGCAAGGAAATGAGAGTGATCCTTCTAAAAAAACATATGACTACCCACGGAAACTCGATAGAAACGTGCGAAACTTGCGGACGATCGTTTCAAAACATCACTTTGCTAAAATACCATCAAAAAGTCCACTTGGAAAGTGTACCGTGTCCAAAATGTAAGAAAATGATCAATCCCGCGCGACTGAGGAGGCATTTAAAGGGACATCTGATAGAGGAAGACCCCGCATTAAGAAGAGCTAAGAAACAGACTCCAAACTTGAAATGTGAGCAGTGCGATTACATAACTTGGAACAACACGCTTTTAGAATGCCACATGAACAGACACCATTTGAAAATCAAGCCGTATGTCTGCCATATATGTAGCAAAGACTTTATTGGCAAACATTTACTGAAGAAACACATAGAAACCCATAAAATAGAAAAGAGTGTGGTCTGCATGGTTTGTTTGAAGAGTTTCTCGAACTCCGCCTGCCTGAAAATGCACTTACGACTGCATACGGGCGAAAAACCCTTCACTTGCGAAATATGTGGAGATAGATTTCGGTCCTCTAGTATAATGAACGTGCATAAGTTGAAAAAGCACTCTGATAAGAGTAATACATGCCCGCTATGCTCAAATAAGTTTCACACTGTGAGGGAATTGAGAAGGCATTTGAAGAAAGTGCATTGGAAGCAGAAAAATAAGCGGTTTGATCCGAAAGAGTTGAAAGGGTTATCCAAGGAGCATTATCATTTGTTTCATGATCGGAGAAGGGTTAAAGTCGATGAGGAAGATGTTGATGTTTATATGCCGTGTTGA
- Protein Sequence
- MDCFKLKLKNVLHSAQFCGICLENENKISALDESLQIVVNQQRYSKTLRDLINVVFKDPENIIASSQICNNCTEKLIQSYIFIKNTEESCKMIEHYVNDLFNKSDDIFNHLSNASTETSNVVIVLEKKINGQEEVFLKEELKNESKRNKEKNCDVKKEVPKTKHSKFKCLDCNMKLPSDRALKLHKVKCNKKVQLQTSRGGIKKTFRNRRYLNAHFKVPSNVKCNVCNKFIDNSDFLEHVMKNHKDSVHKCLKCGEVFYSLNTLQIHDSIYHPTEDNKPQCVMCQKNFSKEEMRFHDCKFGCPECSETPCMHYKYLISYKEQRLNNSKAKCLDCDYICRRKEVLLGHVNREHLNHHPYACDKCGQQFYSKVVLRTHIHTLHDFLICQYCDSEFSVSTYNNHVKSCKDVKRKFLCDNCAASFDTFEKLMNHIKLRHSKDTFPCSLCNKKFVNDSKRKEHLVKVHSGIQNKKKVFNGECVVCQVKYDTKRDLVQHMKTHGPNTIYPCRICNTEYETLRQFRAHNRKHNGPFATCEICGKEMRVILLKKHMTTHGNSIETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHLKGHLIEEDPALRRAKKQTPNLKCEQCDYITWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHKIEKSVVCMVCLKSFSNSACLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNTCPLCSNKFHTVRELRRHLKKVHWKQKNKRFDPKELKGLSKEHYHLFHDRRRVKVDEEDVDVYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00001475;
- 90% Identity
- iTF_00001475;
- 80% Identity
- -