Atri007871.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- ZNF296
- Assembly
- GCA_905340225.1
- Location
- HG996513.1:7290757-7297846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 1.5e+02 3.5 0.2 3 23 118 138 116 138 0.95 2 15 0.0019 0.14 13.0 2.8 1 23 268 290 268 290 0.99 3 15 0.0012 0.087 13.6 0.4 1 19 296 314 296 319 0.90 4 15 0.07 5.2 8.0 3.3 1 23 324 346 324 347 0.95 5 15 0.86 64 4.6 1.1 2 14 489 501 488 502 0.88 6 15 0.00022 0.016 15.9 0.3 2 23 533 554 533 554 0.98 7 15 0.0002 0.015 16.1 3.2 1 23 560 582 560 582 0.98 8 15 10 7.3e+02 1.3 6.2 1 21 654 674 654 676 0.92 9 15 0.069 5.1 8.1 0.2 1 14 711 724 711 727 0.85 10 15 0.0031 0.23 12.3 3.4 1 23 832 854 832 854 0.98 11 15 0.27 20 6.2 6.3 1 23 863 885 863 885 0.98 12 15 0.001 0.073 13.9 2.1 2 23 941 962 941 962 0.97 13 15 0.0033 0.24 12.2 3.9 1 23 979 1001 979 1001 0.97 14 15 1.7e-06 0.00012 22.6 0.7 1 23 1007 1029 1007 1029 0.98 15 15 1.8e-07 1.3e-05 25.7 3.1 1 23 1035 1058 1035 1058 0.98
Sequence Information
- Coding Sequence
- ATGAACCAACCCGGTACTCTACACGTCAACATGGACATAGATCCGCTGAGTTCCTATGAGTACCCCTCCTATGAAAGTTACCCCACTCTTGCCCCCACACAACCATACCCCTACCAGGTCAGAGATCAAGCACCATATTACCAACATAATAATAGCAACTACGTCCCCAACGGAGTTACAACGCAACTAGAATATAAGAATGAGTTACCCGCATTAGAATCAAAAACAGAAGTGGTAACAGACACAAAAGACATGAAATCACTGCCAACAAGAAGAAAAAAAGATAAAAAAGGCCAAAAAAGTACTTACTGCTCCGAAAAGATAACGGATGCAGCATTTCCCTTTTACGGTTGTTCCGTTTGCAATATCAGTTATCAGGCTCTTCACGAGTTGGACCAACATGTAACGATACACAAGAACAGAATGACAAGCTACAGACTACGTTTAAGAAACCAATTTAAAAAGAAACAGATAAAAAAGGAAAAGAAAAAGTTAAAAAGGATGATTAAATTTAAAAAAGAAAAAGATTTGGATCTAGAAATTAAGCCGGAAGACGGGTACATAGGTAACGATAAAGCAGCAGACTTTGTAAACAACGATTGTAACGGAACTGTCACAAATTCTGAGTGTAACGGAATCAGTGCAATACAACCGTATAGTGCAATTAACGAAACTAAATCTGTAGATATACAAAATAATAAATTAAGTATCGGAAATGAAAATAACGAGAATAACGGAAATGATGTTAATAGTAAAGATAATATTATGGAAGAGAAAGAATTAAATAATTTAGAGAAAATTTACAAATGTTTTGCGTGTCAGAAACAATTTACTTTAAGTTATTATTTGAAGTTACATGTTAGGTCGCATACAGACGAGAAGCCTTACAAGTGCAACGCGTGTGGCCAGTCCTTTATAACGGCGAGCAAACTCGGGCGGCACGACAAGCGGATACACCAGACGGCGCGCTTCCAGTGTAGAATATGTTTCAAAGTATTTCTCAGGTTTGACCTGTTGACGGCACACTTCGACAAACACCATCCAGAGGACAAGTTAGAAGGAGAACCTTATGACTACAACGCCATACTACCGTACCTCAAGGAGTTAGAAGAACAGTTGAAGGAGCAGTCCGAGGAGAAGCCGAAGGCTGAAGACCCTGCCTTCGAAGACCTGGACACGCACCAGGTCACGCTCCACGAGGAGTTGGATATCAAGGAAGAGAGCCCTGAAGACGACCAAAAAGACTTGTTACCGAAGCTGGACATATTGGTAGAGGACGTTAAGGGGGACTATGACGACGTCAGAGTCAAGGAGGAGGCGTGTGATGACGAGGGCGCCGGAGACCCCGGTGACCTGGGTGACCCCGGTGACTTGGGTGACCCCGGTGACATGGTTGACCCCGGTGACCTCAGGGACACCGCGGAGGACGGCCGCAGTGACGAGGAGCTCAAACCAGACTATGTAGTATGTACTATCTGCCATCGGTCGTGCCGCAGCTCGGACGAGGACTACTTCCCGCCCAACACGTGGGCGGCCATGCCGGCGCCGGCCTCCCCGGCGCATGCGCATGCGCGGCGCGCGGCGGGCGGCGCGCGGCAGTGCGGCGTGTGCCTCAAGCGGGTGAGCAGCGCGTCCTACCTGCGCGTGCACCTGCGCACGCACACCGGCGAGAGGCCCTTCAAGTGCTACACGTGCGGCCGCGGCTTCATCACCAGCAGCAAGATGCACCGGCACGTGCTCACGCACCAGCAAGACGGAGACGTCAAGAAGGAGGAGGAGGGCGCCGCGGGGGAGGGAGGGGACGTCGCAGAAAGGGAGGGGGGAGAAACCAACATCGACGAGGACGACCTGCCCATACGACCCAAGAAATCGTCTAAAAAGAAATCCAAAACGAAAAACAACATATCCAAACAGGACAACAGTGAAGAGAAGCCGCGAAGGAAACACCAGAAGAGGCCGCACTCCTGCGAGTATTGTAACCAGAAGTTCCTGCACCTGAACATGCTAGAGGTGCACAGAAAGTGCCACGAGGGCGAGCCGTTAGTCCTCAAGTGTCAGTTCTGCCTCGACGAGGTGGCGGACGAGGCAGCCCTGCGCGCGCACGAGGCAGGCCACGTGGGGGCGAAGCCCTACCTCTGCACTATATGCGGGAAGACCTACAAGAAGCGGGAGACGATGGTGAGTGGATCTAACAGTGACCGACTGACGATGTACAGTAGAGGATGTAAATCTAGTAACTTAACCAGATGGACAGCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTACCACCGCAAGCACCACAAGCCGGACCAGGAGTTCGTGTGCGACGTGTGCTCGAAGCGCTTCCCCGCCGCCTGCAAGCTGCACAAGCACCAGCTCACGCACCGCGCCGAGCAGTTCGTGCTGCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCCACACCAAGTACCACGTGCACATGCATCTGGGCACGCACCAGAAGGAGGGGCTGATACTAGAAGAAAATCGAAACGAGATCCTCGCAATGGTGCTTCAAAACGCGCGAAAGATCCCCAAGCATGCGTCCGCTCCCACCTCCATGCCCCCTTCGCACCCCTCCTCCCTCCCCCCCGCCCCCCAGCCCGCGGACGAGCGGTCCCGCGTGTGCAACATATGCGGGGAGGTGTTCCACCACTTCTTCTACCTAGAGGAGCACCTGAAGAGCCACGGGTCGAGGATAGCCGTCGAGGACTTGGTCAAAGAGGAAGACAAGAAATATATATGTTCTGTGTGTAACAAGGGCTTCAAATTACATTATTATCTAAAACTACACACCTTCACACACTCGAAGGAGAAGCCGTTCATTTGCCAGCAGTGTGGCAAAGGGTTTATTACTAAAGGCAAACTCAAGCGGCACTTGGAGACTCACACGGGACTCAAGAAGTACCAGTGTCACATCTGTTACAAGTTCTTCACGCGGCCGAGTTACTTGAGGATCCATATCCGGACAATACACGGCACTCAGGATTATAATTTCCGGTTTGATAAGGGGTACGGAGCGAGGGTCGATGCGCTGCAAGCCGCGGCTTTAACGCGGATGGGTGAGCATAACGCTGTATAA
- Protein Sequence
- MNQPGTLHVNMDIDPLSSYEYPSYESYPTLAPTQPYPYQVRDQAPYYQHNNSNYVPNGVTTQLEYKNELPALESKTEVVTDTKDMKSLPTRRKKDKKGQKSTYCSEKITDAAFPFYGCSVCNISYQALHELDQHVTIHKNRMTSYRLRLRNQFKKKQIKKEKKKLKRMIKFKKEKDLDLEIKPEDGYIGNDKAADFVNNDCNGTVTNSECNGISAIQPYSAINETKSVDIQNNKLSIGNENNENNGNDVNSKDNIMEEKELNNLEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYKCNACGQSFITASKLGRHDKRIHQTARFQCRICFKVFLRFDLLTAHFDKHHPEDKLEGEPYDYNAILPYLKELEEQLKEQSEEKPKAEDPAFEDLDTHQVTLHEELDIKEESPEDDQKDLLPKLDILVEDVKGDYDDVRVKEEACDDEGAGDPGDLGDPGDLGDPGDMVDPGDLRDTAEDGRSDEELKPDYVVCTICHRSCRSSDEDYFPPNTWAAMPAPASPAHAHARRAAGGARQCGVCLKRVSSASYLRVHLRTHTGERPFKCYTCGRGFITSSKMHRHVLTHQQDGDVKKEEEGAAGEGGDVAEREGGETNIDEDDLPIRPKKSSKKKSKTKNNISKQDNSEEKPRRKHQKRPHSCEYCNQKFLHLNMLEVHRKCHEGEPLVLKCQFCLDEVADEAALRAHEAGHVGAKPYLCTICGKTYKKRETMVSGSNSDRLTMYSRGCKSSNLTRWTAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYHRKHHKPDQEFVCDVCSKRFPAACKLHKHQLTHRAEQFVLRYECPVCAHMFHTKYHVHMHLGTHQKEGLILEENRNEILAMVLQNARKIPKHASAPTSMPPSHPSSLPPAPQPADERSRVCNICGEVFHHFFYLEEHLKSHGSRIAVEDLVKEEDKKYICSVCNKGFKLHYYLKLHTFTHSKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHIRTIHGTQDYNFRFDKGYGARVDALQAAALTRMGEHNAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -