Atri011764.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- L
- Assembly
- GCA_905340225.1
- Location
- HG996487.1:7427593-7433009[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.56 41 5.2 5.8 1 23 85 107 85 107 0.97 2 15 7.5e-06 0.00055 20.5 4.1 1 23 113 135 113 135 0.99 3 15 2.3e-05 0.0017 19.0 0.1 1 23 141 163 141 163 0.98 4 15 0.00026 0.019 15.7 0.0 2 23 179 201 178 201 0.96 5 15 5.4 3.9e+02 2.1 0.1 9 23 232 247 228 247 0.93 6 15 0.27 20 6.2 0.0 3 23 299 319 298 319 0.97 7 15 0.15 11 7.0 0.1 3 23 334 354 333 354 0.91 8 15 0.0002 0.015 16.0 0.6 1 23 362 385 362 385 0.95 9 15 0.087 6.4 7.8 0.0 1 23 390 413 390 413 0.92 10 15 0.012 0.9 10.4 0.1 1 23 474 498 474 499 0.94 11 15 0.00018 0.013 16.2 0.1 2 23 562 583 561 583 0.96 12 15 0.052 3.8 8.5 0.0 1 23 591 613 591 613 0.97 13 15 0.78 57 4.8 0.3 1 23 717 739 717 739 0.94 14 15 0.0031 0.23 12.3 0.1 1 20 747 766 747 769 0.95 15 15 0.14 10 7.1 0.3 1 23 776 798 776 798 0.94
Sequence Information
- Coding Sequence
- ATGATATTATTATCTTTTAGCGGCTGCGACTTTGCTGCCAACAGCTCATTACAGCATCCGCCAATGCGCTTTGTAAACAAGCAGAGGCGTTCCGGAGAACATTACCGATCAAATCCATCTTACTGTGATAAGCCCGCTGCTCCCGCGCAGGAATGTTATCAGTTGCACGTATCGATTCGTTATACTGAAGCTTCGGATACGTTATTAACGTTTGAAAATAACTTGTTCCAGACACATTCAGATCAGATGCCATTTCGGTGCGAGTTTTGCTCGCGACTGTTCAAGCACAAGCGATCTCGAGACCGCCACGTCAAGCTGCACACTGGAGACCGAAAATACCGCTGCGCACACTGCGAGTCTGCCTTCTCCAGGAGCGACCACCTGAAGATTCACATGAAGACGCACGACAACCAGAAGCCTTTCCAGTGCACGGTGTGCAACCGCGGGTATAACACGGCAGCTGCTCTGACGTCACACATGCAGGGCCACAAGAGAGACCGCGAGGGGCGCGAGCCCGACCGGCGTCGAGCCCTGCGCTGTTTGCGCTGTGGGGACGCCTTCCGACGACCCGACCTGCTTCAGGCGCACATGGCGACCGCGCATGGCGTGGACGCTGCTGCAATGACACCGCCGCGACGAGTCGCCTCTCAACCACCCCCTACTCTCCTGGCCTGCATCTACTGCACTCGCGACACCTTTACAAGCATGGAGCAGTTACAGCTCCACGTGCGTGCAGCACACTCAGCGCTGCTGAATGGAGAAGGCCCAGTACAAGTGGACCAACCCGCACCCACTGACCTCAGTCGTCGAGCAACTGATGATGTTCCGCCAGCAAAACGTCCACGCTCCGGCTCGGGCACACCACAAACGACACTTTCACCAAGCACATTGCTTTGCAATCAATGTGATGCTGCTCTTCCAGATTTTGAAGCTTTTCGCGCTCATTTGAAGGGCCACCTCGAGGAGGGAGGCGACCTCAGCCGCTCTAGCCCTGCTCCTTGCGTCCATTGCGGTGCTACATTCGCGGATGCTACTGCTTCTGAGCGACATCTCACAGCACATTATCTCGCCGTATCGTGCGAGTATACCTGTCATAGTTGTGCGCGAAGCTTTTCTGCGCCTGATGACCTTCAAAAACATCTTCTTGAATTACACGCACATCATCTGTACCGCTGCGCTCTATGTAAAGAAATCTTTGATTCGAAAGTTGCAATTCAGGTTCACTTTGCGGTGGCACACAGCGGCGAAAATAAAGTTTGGGTTTGCCGATCATGTGGTGCGGGCGCAGGCGCTCTCCGCTCGGAAGCCGAAGGCGCAGCTCACGTGCGCGCCCGGCACGCTGCCAGCGCGCCGCGCTGTGCATGCGGGGCCTTGCTCGGCAGCGGCGCGGCTACCAGGGCGCCCAGACAACACCGCGCTTACAGGTGCCCGGTGCCAGCGTGCAATGACGCGTTTGCCGTGCAATACCTGCTCGAACGTCACATGCAGGCGCATCATGCGATTCAGCAACAGGTATTAAATGGCGAAATATCTAGACCGAAGAGAATGGAAACCAGTAACGGCGGTGAAGGCGGCGATGATGCTCGGTCTCCATGCACTCCTGGGGCCGAGAACGGCGGTATTACCACTGCTGTGGTCGCCGCAGGAGAAGAACGTCGGCGCAAGAACGGTGCAGTAGCACTGCAGTGCGCTTACTGTGGAGAACGGACCCGCAGTCGCGCAGAACTTGAAGCACACACGCGCGCTCATTCCGGTGCTGCTGCCGCCCGACACAAATGTCTGATATGCGACGAAGTACTGCCATCTGCAGCAGTTCTAGCAGAGCACAAGCTGACTCATTGCAAGGTGGTGTCAGGCGATACATGTGCTAGATGTCGCGCTCGGCTGTTGTCTGAAGAGTCGTTTCTTGGTCACATGGCGCGGCACCATCCAGCCCTGCCGGCTCCGTGCGTTGTGTGCCGACAGACACTAGCCTCCGAAGCGGAGGCCCGTCTTCACGCCCGCTTCCATCTTCGGCCGGGTGAAGATGAACAGAGATGTGCAATATGCCTCCGTGCGTTACCCGAAGGCGAGGCAGGCGAAGGTGCACGTGCTTGTTCAGCATGCTACGCGCGCCACGCAGCCCCGCGCCCACCGCCGCCTGCGGACCACGACTGTCGCCTCTGCCGACGAGCTCTCGGGTCGCCGACGCGACTACAAGCCCACCTAATTGAACACACGTTCGCTGGGATCGGTGCATTCACTTGCTACCTGTGTTCGGCAGTATTTACGAGCGCTGCAGGCCTGCAACGACATCTTCCCGAGCATGCATCTGCACCTCGACCTTACGACTGCGCTCGTTGCGGACTGAAGTTCTTCTTCCGTGCAGAGCTAGACAATCATGCGTTTGTTCATTTGGAAGAAGCAGAAATTGCTCAGAGGGCTTTCTATGAGGCATATGCGCGAGGCGCTGCTACGGCGTGGGCGGCCTTAGCACCGCCGGAGCCGCGAACATCGCCGCAAGCAGAAGTAAAGCGAGAACCGGAAATAAAAGAAGAGCGTGGAAATGATGAGTATATAGAGGTGTCATCACCGCCGCCTGCCCAGCCCCCGCCCGCGCCCCCCGCGCCGCCGTCGCCCGCGCCCGTGGTGAAGCAGGAGAAGCCGGATGAGGAGTGA
- Protein Sequence
- MILLSFSGCDFAANSSLQHPPMRFVNKQRRSGEHYRSNPSYCDKPAAPAQECYQLHVSIRYTEASDTLLTFENNLFQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMATAHGVDAAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQVDQPAPTDLSRRATDDVPPAKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGDLSRSSPAPCVHCGATFADATASERHLTAHYLAVSCEYTCHSCARSFSAPDDLQKHLLELHAHHLYRCALCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRARHAASAPRCACGALLGSGAATRAPRQHRAYRCPVPACNDAFAVQYLLERHMQAHHAIQQQVLNGEISRPKRMETSNGGEGGDDARSPCTPGAENGGITTAVVAAGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCARCRARLLSEESFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGEGARACSACYARHAAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALAPPEPRTSPQAEVKREPEIKEERGNDEYIEVSSPPPAQPPPAPPAPPSPAPVVKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00822228;
- 80% Identity
- -