Atri021669.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- Zfy1
- Assembly
- GCA_905340225.1
- Location
- HG996505.1:492353-497973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 1.6 9.6 1.3 3 23 250 270 248 270 0.96 2 13 0.16 12 6.9 0.0 2 23 311 333 310 333 0.94 3 13 1.4e-05 0.001 19.7 4.1 3 23 356 376 355 376 0.97 4 13 9.9e-05 0.0073 17.0 1.0 1 23 382 405 382 405 0.95 5 13 0.0058 0.43 11.5 0.1 1 23 411 433 411 433 0.93 6 13 0.00023 0.017 15.8 0.1 1 19 439 457 439 460 0.94 7 13 0.039 2.9 8.9 2.5 1 23 582 604 582 604 0.95 8 13 0.00032 0.023 15.4 2.0 2 23 611 633 610 633 0.92 9 13 3e-06 0.00022 21.8 0.3 1 23 639 661 639 661 0.98 10 13 1.9e-07 1.4e-05 25.6 3.4 1 23 667 689 667 689 0.98 11 13 0.0022 0.16 12.8 2.8 1 23 695 717 695 717 0.96 12 13 0.00099 0.072 13.9 2.1 1 23 723 745 723 745 0.94 13 13 0.011 0.82 10.6 1.4 1 19 751 769 751 774 0.87
Sequence Information
- Coding Sequence
- ATGAATAACGAAACTGAACAAATCTATATCATAAATGTAGAACAAAGCGAGCCACCGCCGCTGACACAAAAGGTGCTTGAAGTGCATATATCGGGGAACAACCAGGCGAACCTTAAGAATGTGAAAGACTTCTCAAATACGTGCCGCACGTGTGCCACTATCACAGAGTTCGTCATCCCCATATTTGAGGGGGAGGGGCTGCAGAACCGCCTGGCCGATAAGATACAAAAACACCTACCTATTCAGGTGAGCGAGCGCGACGTGCTGCCGCGCGTGGTGTGCTACCAGTGCGCGAGCACGCTGCTGGCGTGGCACGAGCTGGTGAAGTGCTGCAGCCAGGCGGACGCTGCGCTGCGGGCGCGCGCCGACCAGAGCCTACAGGAACCAAAATGTACAAACCCCGAGCCAAACTCCAATGTCAAAGAAGAACTGAAAGACAAGTTCTTTTATACCAAAATCCAACGTGCTGTCGTCGATTACTTTGATGATGAACAAACTCTGGACGGAGACTTCTTAGACCTGGAGTTCGTTTGCCAAAAGTGTGTCGATAAGCCTGCTCTGGCCACGATGCTCGGCCTCGCGGATCACCTCCAGCACGATCACGCCGAGGACGTGCGCGACGCGGGAGCTGTCCGGAGCTTCATCACCGACCACGTCACGTTTGAACAAAACCTGGTCGACGAATTGGATGAAGAAGCACAGTCAGACGATAAGGAGAAGTCTCCGACGGTGTTGCCCAGCCTGTTCTGTCAGTTCTGCCCGAGCGTGTTCTCGTCTCCGACACGGCTGGTGCACCACCTCAACCAGCACGTGGACGTGTGCATCGAGGACGGCGTCGAGTGCTGCGACACCGAGTTCGAGTGCACCTGGAGCTTCGTCCGCCACCTGCAGGAGGCCCACGTGCACTCCGAGGGGCACCCCGGGCAGCTCGTGTGCGCGCGCTGCGGGGTCAGCGCCGAGCACGTGGCCGAGCTGCGCGCGCACCTCCGCGCCGCGCACGCCGAGCGCCTGCCCCGGGGCGGGCCGGCCCCGAGCCCCAACAACCAGAAGTACATCCCGGTCGCCTGCCCCGAGTGCCACAAGACCTTCTCCAACAAGTACAACATGCGCGTGCACCTGCACAGCCACTCCGGCGCTGCCTCGTTCGCCTGCGACAAGTGCGCCAAGACCTACCGCAACCGGGGCAATCTCACCACCCACAAGAAGCTGGCCCACGAGGGCATCCTGAAGTTCCTGTGCTACGAGTGCGGCGAGACCTTCCCCACGCGCTCGGCGCGCGACGTGCACGCGCGGCTACACACGGGCGACACGCCCTACAAGTGCGACCTCTGCGGCAAGTCGTACCGCGCCAAGAACACACTCGCGCGACATGCAGTAACGGGCATTATTTGTTGCAGGAGCGTCTGTGAAACGCGCGAACGCGAACAGGATCCCGAGCGGTCCGCGTCCGACCTGTCCGACGACGAACCGCTGGCGACACTCGCCACCAAAAAGCCCACAACCTCACATCTTTACAGTAACTTCTATCGGGCGCTGGTTAATTTCAGAAACCATTTTGTAACCGATCAACACGACAGAGAAGAATATCCCGACTTCACCGACTCCAGCGTGTCTGAGACCGAAGACGGCGACGTGGACAGGTTCGACGACCTGTCCGCGTGTAACATGAGGAGGGACCGGCTGGACCAGGAGACCCGGGCCGAGCTGAGCGAGGTGCAGAACAAGATCGACGAGAAGGTGTACTACACCTGCAAGGTATGCGGCAAGAACCTGAGCTCGGCGCACACGTACGTGTTCCACAAGCGGATCCACACGGGCGAGAGGCCCTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGGCTGCAGCGGCATCTCACGGAGACGCACGAGCGCGTGCGCAGGTACGCGTGCTCGCTGTGCCCCAAGAACTTCGCCAACTTGCAGAACTTGAAGCAGCACCTGAGGATACACACGGGGGAGAAGCCCTTCGTGTGCCCCCACTGCGGGAAGAGGTTCACGCAGAGCGGCTCGCTGCACGTGCACCTGAAGACCCACAGCTCGCAGTTCCCGCACCACTGTGCCGAGTGCGGCGCCAAGTTCAAGCTGCGCTCCGGCCTCGTGCGCCACCGGCTCAAGCACAGCGGGGAGCGCCCGCACGTGTGCGCGCACTGCGGGCGCGGCTTCCGGCAGCGGCACGAGCTGGCCGGCCACGCCCTGCAGCACTCGGGGGCCAAGCCCCACGCCTGCGCCCTGTGCGGCGCCGCCTTCCGCACGCGCCGCGCGCTGCGCCACCACGACAAGAGGCTGCACGACCACGCTGCGCCCGCGCAGCTCGCCTACGACCACGGCGGCCACTACTGA
- Protein Sequence
- MNNETEQIYIINVEQSEPPPLTQKVLEVHISGNNQANLKNVKDFSNTCRTCATITEFVIPIFEGEGLQNRLADKIQKHLPIQVSERDVLPRVVCYQCASTLLAWHELVKCCSQADAALRARADQSLQEPKCTNPEPNSNVKEELKDKFFYTKIQRAVVDYFDDEQTLDGDFLDLEFVCQKCVDKPALATMLGLADHLQHDHAEDVRDAGAVRSFITDHVTFEQNLVDELDEEAQSDDKEKSPTVLPSLFCQFCPSVFSSPTRLVHHLNQHVDVCIEDGVECCDTEFECTWSFVRHLQEAHVHSEGHPGQLVCARCGVSAEHVAELRAHLRAAHAERLPRGGPAPSPNNQKYIPVACPECHKTFSNKYNMRVHLHSHSGAASFACDKCAKTYRNRGNLTTHKKLAHEGILKFLCYECGETFPTRSARDVHARLHTGDTPYKCDLCGKSYRAKNTLARHAVTGIICCRSVCETREREQDPERSASDLSDDEPLATLATKKPTTSHLYSNFYRALVNFRNHFVTDQHDREEYPDFTDSSVSETEDGDVDRFDDLSACNMRRDRLDQETRAELSEVQNKIDEKVYYTCKVCGKNLSSAHTYVFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERVRRYACSLCPKNFANLQNLKQHLRIHTGEKPFVCPHCGKRFTQSGSLHVHLKTHSSQFPHHCAECGAKFKLRSGLVRHRLKHSGERPHVCAHCGRGFRQRHELAGHALQHSGAKPHACALCGAAFRTRRALRHHDKRLHDHAAPAQLAYDHGGHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -