Atri007461.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- Znf711
- Assembly
- GCA_905340225.1
- Location
- HG996513.1:2296710-2300866[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0046 0.34 11.8 1.4 1 23 100 123 100 123 0.93 2 18 0.0028 0.2 12.5 2.7 2 23 195 216 194 216 0.97 3 18 0.004 0.3 12.0 0.1 1 23 220 242 220 242 0.95 4 18 0.018 1.3 9.9 2.1 1 23 247 270 247 270 0.97 5 18 4.6 3.4e+02 2.3 1.0 2 11 276 285 275 298 0.75 6 18 0.001 0.074 13.8 0.4 2 23 307 329 306 329 0.96 7 18 2.9e-05 0.0021 18.7 1.2 1 23 335 357 335 357 0.98 8 18 0.0076 0.56 11.1 2.7 1 23 363 385 363 385 0.98 9 18 0.061 4.5 8.2 0.2 1 23 457 480 457 480 0.91 10 18 0.074 5.4 8.0 0.2 2 23 507 529 506 529 0.90 11 18 0.0029 0.21 12.4 2.9 2 23 552 573 551 573 0.97 12 18 3.7 2.7e+02 2.6 0.7 1 14 577 590 577 599 0.85 13 18 0.0029 0.21 12.4 1.6 1 23 604 627 604 627 0.96 14 18 0.55 40 5.2 2.0 2 23 635 657 634 657 0.90 15 18 2e-05 0.0015 19.2 0.3 2 23 665 687 664 687 0.96 16 18 0.0025 0.19 12.6 1.7 1 23 693 715 693 715 0.96 17 18 1.6e-05 0.0012 19.5 2.3 1 23 721 743 721 743 0.99 18 18 0.00016 0.012 16.4 4.5 1 23 749 772 749 772 0.97
Sequence Information
- Coding Sequence
- ATGTATGCAAAAGTGCATCTAAATCTCTATAAATTACAGTCAAATCTTTTCTTTGTAGGTCGAAGCGAAGCAGCAGAGCTTGCTACCAAAATACTATCCTCGCACAAAGATCACCCAGCTGCTTTGAAGGTAGCTGGAAATAACGCTAAAACGAAACGTATAGTAGATTCCAATGCACTGAAACTCAAGAAGAAAAATCAAAAACTTTGCCAAGAAGAATTGTTTAAACAACGCTACAATATAAGAGAAATTCTTCTTTGTAGTAACGCTACGCCAATACGTAAGTATGATGTCGGGTTCGTGTGCTGTTTCTGCGAGAAGCAGTTTCAAAACGCTGCTGATTTAAAGACCCATACAATTGAAGATCACGATGACGACATCAAACTAGATTTTATGAAAGGCAAAAGAATGCTGGCCTTCTTGGTGAAACTGGATATAACAGCATTAACGTGTATATTATGTGACACTCAAGTGGATTCAGTTGAGATGCTTATCGAACATTTACGATGCGAACATTCAAAGCCCATGTTTCTTGGCATCAAGAGCTACATAATTCCATTCAAGTTCGATGATACTAAACTAAAATGCACGTTCTGTACGCAAACATTTAACAGGTTCAAAGTCTTACAAGAACACATGTATACACATTATAAAAACTTCGTGTGTGACGTCTGCGATATGGGCTTTGTCAATGAGAAGATGCTGTTAACGCACAGCGATAGTCATAAAGTAGGAATCTTTAGATGCGGCCATTGCCCCGAGGAATTTGATACGCCGCGGAAAAAGAAATACCACGAAAAAACTGTTCATTTGTTGTCGTTGAACAAGTGTGGGTACTGCGACGAGAAGTTTATGTGGTACCGCCAGAAATGTGCCCACATAGCAGAGGTCCATGGCATTGTCGTAATACCACCAAAAGAATGCAAAGCGTGCGAGAAAATCTTCCCCTCAGACTCAAAGCTTCAAATGCATATTAGAAGAGACCATTTACTTGAAAGAAGATTCAAATGCACAGAATGTGACATGGAGTTTTTTACCAAAGAGACTTTGAACGACCATATGGTGAAACATACTGGCATCAAACTGTTTTCGTGTAAGGTTTGCTGTAAGTCGTACGGTCTGAAGAAGGCTCTGAGAGAACACATGAGAATACACGAGAACGATAGGCGTTTTAAATGTGTTCTGCGTAACGCGAATGCCAGGATCAAAACGGATAGTGACAAAATAGTGAAACGCGCTTTGAACAGGAAACTGTCTAAGAAAACAGAAGAATCCAAAGTCAATGAATTGGAAAAACATAGAAGTAATGTACGACTTATTCTCCAATGCTCTAACGCTACACCTATACGATGTAGGGGAGGCATAGGGTACGCTTGCTGCTTCTGTGGCGACGAATACCCAGATCCTGCAGACCTTAAAAAACACACAACAGCAGCCCATGACGATAAGACCAAACTAAAATTCATGGCGGGGAAAATGATGTTCTCATACCTCGTGAAACTAGACATCACTGATCTCACCTGCAATATGTGTGGCGCAAAATTTGATTTACTAGAACAACTGTTAGACCACTTCATTAATACGCACAATCAGAAACTCCATAACGATATCAAAAACCATATAATGCCTTTCAAATTTGATGACGACGTACTAAAATGCGTGTATTGTTTGCAAGTGTTTCATAAATTTAAGAATTTACAACAGCATATGAATGTTCATTGTAGGAATTATATTTGTGAATTCTGTGACGCTGGATTCATTAACAAACATATCCTTGCTTGCCACACAGAAGCTCATAAAACTGGGACGTTCAAATGTGATCTGTGTCCGAAAATCTTTGACACCCAACGCAAGAAGAAAAGCCACGAAAAGTCAGTTCACATACACGCAAATATGCTTAATAAATGTGGTTACTGTAGTCAGAAATTTACGAATTATAGAAAGAAAGATGATCATCTGTCGAAAGTCCACGGTGTACTTATGAAGGCTCTCAAATGTCCTGCTTGCGATAAAATCTTTGATAACAAGAGCGCCCTAACAATTCACACAAAACGAGATCATTTAATGGAGAGAAGGCATAATTGTTCCTTATGTGACATGAGCTTTTTTGGGTCTAATGAATTGAAACTTCACATGGTGAAGCATACAGGTCTAAGAGAATTCAAATGTGAGGTGTGCTTCAAGAAATATGGTCGAAAGAAGACATTGACAGAGCACATGAGAATACATAATGATGATAGACGGTTTAAATGCGAACATTGTGGACAGGCTTTCGTTCAGAAATGTAGTTGGAAAGGGCATATGAGAAATAAACATGGGGAATTGGTCTAG
- Protein Sequence
- MYAKVHLNLYKLQSNLFFVGRSEAAELATKILSSHKDHPAALKVAGNNAKTKRIVDSNALKLKKKNQKLCQEELFKQRYNIREILLCSNATPIRKYDVGFVCCFCEKQFQNAADLKTHTIEDHDDDIKLDFMKGKRMLAFLVKLDITALTCILCDTQVDSVEMLIEHLRCEHSKPMFLGIKSYIIPFKFDDTKLKCTFCTQTFNRFKVLQEHMYTHYKNFVCDVCDMGFVNEKMLLTHSDSHKVGIFRCGHCPEEFDTPRKKKYHEKTVHLLSLNKCGYCDEKFMWYRQKCAHIAEVHGIVVIPPKECKACEKIFPSDSKLQMHIRRDHLLERRFKCTECDMEFFTKETLNDHMVKHTGIKLFSCKVCCKSYGLKKALREHMRIHENDRRFKCVLRNANARIKTDSDKIVKRALNRKLSKKTEESKVNELEKHRSNVRLILQCSNATPIRCRGGIGYACCFCGDEYPDPADLKKHTTAAHDDKTKLKFMAGKMMFSYLVKLDITDLTCNMCGAKFDLLEQLLDHFINTHNQKLHNDIKNHIMPFKFDDDVLKCVYCLQVFHKFKNLQQHMNVHCRNYICEFCDAGFINKHILACHTEAHKTGTFKCDLCPKIFDTQRKKKSHEKSVHIHANMLNKCGYCSQKFTNYRKKDDHLSKVHGVLMKALKCPACDKIFDNKSALTIHTKRDHLMERRHNCSLCDMSFFGSNELKLHMVKHTGLREFKCEVCFKKYGRKKTLTEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRNKHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -