Atri007413.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- -
- Assembly
- GCA_905340225.1
- Location
- HG996513.1:1962680-1965454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.1 7.7 7.5 0.3 2 23 2 24 1 24 0.95 2 17 0.061 4.5 8.2 0.1 2 19 96 113 95 115 0.94 3 17 8.7e-07 6.4e-05 23.5 0.8 1 23 121 144 121 144 0.94 4 17 0.037 2.7 8.9 0.2 3 20 150 167 149 169 0.91 5 17 0.36 26 5.8 2.4 1 23 176 199 176 199 0.93 6 17 4.8e-05 0.0035 18.0 1.3 1 23 208 231 208 231 0.95 7 17 0.00024 0.018 15.8 0.1 1 23 236 258 236 258 0.95 8 17 3.8e-05 0.0028 18.3 1.9 1 20 264 283 264 286 0.94 9 17 0.015 1.1 10.2 1.5 2 23 320 342 319 342 0.95 10 17 2.3 1.7e+02 3.3 0.2 3 23 368 389 366 389 0.89 11 17 6.2e-06 0.00046 20.8 0.7 1 23 437 460 437 460 0.97 12 17 0.029 2.2 9.2 0.8 3 20 467 484 466 486 0.93 13 17 0.081 5.9 7.9 1.0 3 23 495 516 493 516 0.89 14 17 0.0026 0.19 12.6 2.7 1 23 523 546 523 546 0.95 15 17 0.0031 0.23 12.3 1.5 1 23 551 573 551 573 0.95 16 17 3.4e-06 0.00025 21.6 0.7 1 20 579 598 579 601 0.94 17 17 0.00038 0.028 15.2 2.5 1 23 607 630 607 630 0.97
Sequence Information
- Coding Sequence
- ATGGTGTGCGTGTACTGCTGCGAGCCGTACGAGGACCCCGCCAAGTACAGGGACCACATGAGACGTGAACACTCGGTATTCAACGTCAACACTGCATTCGCGCACACCATGAGCTCGGAAGAGTATCTCAAAGTCGATTGCACGGAAATAGGCTGCAGACTGTGCGCGAAAACTCTTGACTCTCTTCCCTCTGCCGCTCAACACTTAGTCTTTGAACACGATAAGAAAATCAATCTTGCCGCGGAGATAGGACTTCAAGTCTTCAAGCTAGGACAGGAGAGATGGGTGTGCGCTATCTGCTCGCAGAAATTCCCGTCCCTCAGAGCTTTGAGTCGACATAACAGCTGTCACTACCACAAATATACGTGCGAAACTTGCGGGAAATCGTATATTAACCGCGAGAATTTGAACAAGCACATACTCTTTAGTCATTCCCAAGATAAGATATGCGTTAAGTGTAGGAAGTCGTTTCCGAACAGCGCGGATCGTCGGCAACACGTGCTATCCAACAAGCGTTGTTGGCCGTTCTGCTGCAACCTTTGTGGAGATAGATTCGTCTCCAGAAAACTGAAGTCGACCCATATGAGCGAAGTGCACAGTGTGGGTGGTAAAAAAAAGTGTCATACGTGCCCTGAATGCGACAGGTCGTTCACCGAATGGAGGTTATATAGATCTCATTATATTATCACTCATACTGACGTGAATTATGTGTGTCCTTTCTGTGGCCTGAAATTCGATAACAAAGGCAGCTTGGAAGGTCATAAAGTCATTCACACGAAGGAAAAGCTGTTCCATTGCACAGTGTGTGCTAAATCGTTCGTTCGGAAGAAGAACTTGACGCAGCACATGTGGATACATAAGAAGCAAAATGACGCGAATTTCATCGCTAAACGGAACGCCGAGATTATCGTGAAATATTCAACCGTTTTCCCCTTCAAGCTGCCTGAGGAGAGCATGGTTTGTGTGTACTGTTGCGAAAGCTACTGCGACCCTGCGGATTTCAGGGCTCACATGAATAAGGAACACGAAACTTTTAACTCTCGGATGGCATTCCTGCATTGTTCTGAAGGATATATCAAAGTTGACTGTACCCATATTAATTGCAGACTATGTCTCAAAAGCTTTCAAAGTTTAGATCGAGTCGCGGAACATTTGTATTCTGAACATAAGAAGCCATTGGATCTAACAGTCGCGTTAGGTCTGCAGCCATTTAAATTGGAAAGCAATAAGCTGCTATGCGCAATCTGTAACGCTAAATCCCTTTGCTTGAGGCAGCTTAGTAGACACACACAGAGCCATTTCTGGAGGTACACTTGTGAGGCGTGTGGAAAATCGTACGCTACAAATACGACATTACGTAGCCACATAAGATACTCTCATATAGGCAACGAAAGAATATGTCGAAAATGTAAGAAAACCTTCAGTTCTATTGAGGAGAAGAGAAAGCATTTGACAGAATCACCTAAATGTTGGTCGCACTTGTGCTACATTTGCGGGGAAAGGTTCATGTCGTGGCATCTCAAACAGCTACATTTAGCAGAGGTGCATGAAGTGGAAAAGAAGACATATGTGTGTCCGGAGTGTGGGCAAGTCTTCCATGAACGAAAAAAGTATAGAACTCACTTTAAGTTGTCCCATACGGACGATAACTTTGTTTGTTCGTGCTGCGGCATGAAATTTGAGACGAAGAAGAATTTGGAAGAGCATGTAGTCTCTCATACTATGGAAAAGCTCTTTCCTTGTACGGTCTGCTCGAAATCCTTTCCGAGAAAGAAGAATTTGAACCAACACATGTGGATTCACAAGGAGCACAAACGTTTTGAGTGCAAACCTTGCAATAAGAAGTTCAATCAGAAAGTTAGCTGGAAAACTCATATGAAATCGTATCACCCGGAATCAGAGGACATAGAAGGAAAGAATAATAACCTAAAGTTAATGATTTCTGTTTTGATGGATCGATAA
- Protein Sequence
- MVCVYCCEPYEDPAKYRDHMRREHSVFNVNTAFAHTMSSEEYLKVDCTEIGCRLCAKTLDSLPSAAQHLVFEHDKKINLAAEIGLQVFKLGQERWVCAICSQKFPSLRALSRHNSCHYHKYTCETCGKSYINRENLNKHILFSHSQDKICVKCRKSFPNSADRRQHVLSNKRCWPFCCNLCGDRFVSRKLKSTHMSEVHSVGGKKKCHTCPECDRSFTEWRLYRSHYIITHTDVNYVCPFCGLKFDNKGSLEGHKVIHTKEKLFHCTVCAKSFVRKKNLTQHMWIHKKQNDANFIAKRNAEIIVKYSTVFPFKLPEESMVCVYCCESYCDPADFRAHMNKEHETFNSRMAFLHCSEGYIKVDCTHINCRLCLKSFQSLDRVAEHLYSEHKKPLDLTVALGLQPFKLESNKLLCAICNAKSLCLRQLSRHTQSHFWRYTCEACGKSYATNTTLRSHIRYSHIGNERICRKCKKTFSSIEEKRKHLTESPKCWSHLCYICGERFMSWHLKQLHLAEVHEVEKKTYVCPECGQVFHERKKYRTHFKLSHTDDNFVCSCCGMKFETKKNLEEHVVSHTMEKLFPCTVCSKSFPRKKNLNQHMWIHKEHKRFECKPCNKKFNQKVSWKTHMKSYHPESEDIEGKNNNLKLMISVLMDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -