Basic Information

Insect: Abrostola tripartita
Gene Symbol: -
Assembly: GCA_905340225.1
Location: HG996515.1:507934-514040[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.7e-07 5.6e-05 23.7 0.2 1 23 362 384 362 384 0.98

2 10 0.00016 0.012 16.3 1.0 2 23 390 412 389 412 0.94

3 10 3.5e-07 2.6e-05 24.7 1.4 1 23 420 442 420 442 0.98

4 10 3.6e-06 0.00026 21.6 2.0 1 20 448 467 448 469 0.96

5 10 8.4e-05 0.0062 17.2 2.9 2 23 481 502 480 502 0.97

6 10 2.1e-05 0.0016 19.1 2.0 1 23 508 530 508 530 0.97

7 10 2.3e-06 0.00017 22.2 0.6 1 23 536 558 536 558 0.98

8 10 1.8e-06 0.00013 22.5 5.9 1 23 564 586 564 586 0.99

9 10 5.7e-05 0.0042 17.8 2.7 2 23 593 614 592 614 0.97

10 10 0.00024 0.017 15.8 3.4 1 23 620 643 620 643 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.7e-07	5.6e-05	23.7	0.2	1	23	362	384	362	384	0.98
2	10	0.00016	0.012	16.3	1.0	2	23	390	412	389	412	0.94
3	10	3.5e-07	2.6e-05	24.7	1.4	1	23	420	442	420	442	0.98
4	10	3.6e-06	0.00026	21.6	2.0	1	20	448	467	448	469	0.96
5	10	8.4e-05	0.0062	17.2	2.9	2	23	481	502	480	502	0.97
6	10	2.1e-05	0.0016	19.1	2.0	1	23	508	530	508	530	0.97
7	10	2.3e-06	0.00017	22.2	0.6	1	23	536	558	536	558	0.98
8	10	1.8e-06	0.00013	22.5	5.9	1	23	564	586	564	586	0.99
9	10	5.7e-05	0.0042	17.8	2.7	2	23	593	614	592	614	0.97
10	10	0.00024	0.017	15.8	3.4	1	23	620	643	620	643	0.95

Sequence Information

Coding Sequence: ATGCTAAAGTATACTACAACATATTCAGTAAACGAAAACATTTCGTTAGAATACTACAACATATCGTTAGTATACGACAGCATATCATCAGTATACGACAACATATCATCAGTATACGACAACATATCAGTATACGACAACATATCAGTATACGACAACATATCATTAGTATACGACAACATATCATCAGTATACGACTACATATCATTAGTATACTACAACATATTAATAAACGAAAACATTTCGTTAGAATACTACAACATATCGTTAGTATACGACAACATATCATTAGTATACGACAACATATCATTAGTGAACGACAACATATCATTAGTATACGACAACATATCATTAGTATACGACAACATATCATCAGTATACGACAACATATCATCAGTATACGACAACATATCATTAGTCTACGACAACATATCATTAGTCTACGACAACATATCATTAGTATACTACAACATATCATTATTATTCTTTAACACATCTATACAACAACATATCATTTGTTACTGCAACATATCGTTAGTATACGACAACATATCATTAGTATACGACAACATATCATCAGTATACGACAACATCATCAGTATTCGACAACATCATCAGTATACGACAACATCATCAGTATACGACAACATATCATCAGTATACGACAACATATCATCAGTATACGACAACATATCATCAGTATACGACAACATTTCATCAGTATACGACAACATATCATTAGTCTACGACAACATTTCATCAGTATACGACAACATATCATTAGTCTACGACAACATATCATTAGTATACTACAACATATCATTAGTATACTACAACATATCATCAGTATACGACAACATCATCATATACGACAACATATCATCAGTATACGACAACATATCATCAGTATACGACAACATATCTTCAGTATACGACAACATATCTTCAGTATACGACAACATATCTTCAGTATACGACAACATATCTTCAGTATACGACAACATATCATTAGTATACGACAACATATCATCAGTATACGACAACATCATCATACATTACGAATCATCGCCGTACGGCCGCGACTTCAGCTGTCAAATCTGCAGGAAATCCTTTGCGAACCCCGGTAACGTACAACGACACATGCTAATACACACTAAAGAGAAAATCAAATGCACCGAGTGTCCCGTAGAATTCACCAACAAGATGAAGCTGGAAAAACACATGTTTAACAAGCATACAGTGGCGAGCCCACGTGTCTTCCCCTGTGACACGTGCGAAAAGTCATTCAAATCTTCCTCAAATTTGATGCAGCACAGAAAAGTACATTTAACCGTAAAACCTTTCACCTGCCCTCTATGTTATAAAAGTTTTTCTTTTAAGTCGAATCTTAAGAAACACCAAGGAAAGAGTCGCTGCAAGAGACCTGCAGGAGAGCCAATCAAATGCCACGTCTGCAGCAAGGTCTTCGACAAAGAATTTCTCCTAAAAAGCCATCTAAGAAGACATGACACTGAAAGACCGTTTTCTTGCGAACAATGCTCCATGAAATTTAAATACAAAAGTACCTTGATACGACATATACAATTGCATGACGGTGTTAGGCCATTCCCGTGTCCTTACTGCGAGAAAAGCTTCACTCACTCAGGGTTATTGAAGCCGCATATCAGGGTGCATACTGGCGAAAAGCCATACCAGTGTCCTGTATGCAAGAAGACTTTCGCTCACAAACACAACATGCAACGACATCAATTGAGACACGATAAGATCAAGCATTTAGTATGTGATGTTTGCCACAAGAAGTTTCCTAAAGAGAGTCGCTTAAAGTATCATATGAAGACGCATGTTAATGAGAAGTATTTCGCTTGCCAAGTTTGTCCGAAGAGGTTTTCTCATAAGCAGAATGTGTTACGACACTACAGTCGAAAACATCCGGGTAAGACTTACACAGGCACGGACACCGACGCCTCAGTCGCTCTTAAAGTTTGGGACACTTACAAAAGTAAGTATTACGATGATGAAGCTGAAGTTATTCTTGGTTAA
Protein Sequence: MLKYTTTYSVNENISLEYYNISLVYDSISSVYDNISSVYDNISVYDNISVYDNISLVYDNISSVYDYISLVYYNILINENISLEYYNISLVYDNISLVYDNISLVNDNISLVYDNISLVYDNISSVYDNISSVYDNISLVYDNISLVYDNISLVYYNISLLFFNTSIQQHIICYCNISLVYDNISLVYDNISSVYDNIISIRQHHQYTTTSSVYDNISSVYDNISSVYDNISSVYDNISSVYDNISLVYDNISSVYDNISLVYDNISLVYYNISLVYYNISSVYDNIIIYDNISSVYDNISSVYDNISSVYDNISSVYDNISSVYDNISSVYDNISLVYDNISSVYDNIIIHYESSPYGRDFSCQICRKSFANPGNVQRHMLIHTKEKIKCTECPVEFTNKMKLEKHMFNKHTVASPRVFPCDTCEKSFKSSSNLMQHRKVHLTVKPFTCPLCYKSFSFKSNLKKHQGKSRCKRPAGEPIKCHVCSKVFDKEFLLKSHLRRHDTERPFSCEQCSMKFKYKSTLIRHIQLHDGVRPFPCPYCEKSFTHSGLLKPHIRVHTGEKPYQCPVCKKTFAHKHNMQRHQLRHDKIKHLVCDVCHKKFPKESRLKYHMKTHVNEKYFACQVCPKRFSHKQNVLRHYSRKHPGKTYTGTDTDASVALKVWDTYKSKYYDDEAEVILG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -