Basic Information

Insect: Abrostola tripartita
Gene Symbol: -
Assembly: GCA_905340225.1
Location: HG996500.1:10218183-10222013[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00055 0.04 14.7 2.7 1 23 129 151 129 151 0.97

2 13 9.3e-05 0.0068 17.1 1.5 2 23 157 178 156 178 0.96

3 13 0.00018 0.013 16.2 0.7 2 23 183 204 182 204 0.97

4 13 1.8e-06 0.00014 22.5 1.5 2 23 225 246 224 246 0.98

5 13 1.5e-06 0.00011 22.7 2.8 1 23 254 276 254 276 0.97

6 13 6.2e-05 0.0046 17.7 2.8 1 23 282 304 282 304 0.96

7 13 5e-05 0.0036 18.0 3.4 1 23 310 332 310 332 0.98

8 13 3.1e-08 2.3e-06 28.0 1.3 1 23 338 360 338 360 0.95

9 13 1.8e-05 0.0013 19.4 3.4 1 23 366 388 366 388 0.97

10 13 5.3e-06 0.00039 21.0 0.8 1 23 394 416 394 416 0.98

11 13 0.91 67 4.6 0.7 12 23 425 436 423 436 0.88

12 13 1.4e-06 0.0001 22.8 2.1 1 23 442 464 442 464 0.98

13 13 0.0035 0.26 12.2 0.7 1 20 470 489 470 492 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00055	0.04	14.7	2.7	1	23	129	151	129	151	0.97
2	13	9.3e-05	0.0068	17.1	1.5	2	23	157	178	156	178	0.96
3	13	0.00018	0.013	16.2	0.7	2	23	183	204	182	204	0.97
4	13	1.8e-06	0.00014	22.5	1.5	2	23	225	246	224	246	0.98
5	13	1.5e-06	0.00011	22.7	2.8	1	23	254	276	254	276	0.97
6	13	6.2e-05	0.0046	17.7	2.8	1	23	282	304	282	304	0.96
7	13	5e-05	0.0036	18.0	3.4	1	23	310	332	310	332	0.98
8	13	3.1e-08	2.3e-06	28.0	1.3	1	23	338	360	338	360	0.95
9	13	1.8e-05	0.0013	19.4	3.4	1	23	366	388	366	388	0.97
10	13	5.3e-06	0.00039	21.0	0.8	1	23	394	416	394	416	0.98
11	13	0.91	67	4.6	0.7	12	23	425	436	423	436	0.88
12	13	1.4e-06	0.0001	22.8	2.1	1	23	442	464	442	464	0.98
13	13	0.0035	0.26	12.2	0.7	1	20	470	489	470	492	0.94

Sequence Information

Coding Sequence: ATGCTAGACTTAACTACATCGTGTCGAACTTGTATGAAGGACAACGTGACTTTGGTTGACTTATACGAAAATGTGAAAATTGAAGAAAATTGTCTTCAATTAGCCGAGTTGCTTGTGCAGTGTACCCCAACAGAGGTGTCCAAAGAAGATGGTTTGCCACAAAACCTTTGTGATGATTGTGTTAAGGTCTTACAAGTTGCGTACACGTTCCGTACGCAGGCGGCGAAAGCACAGGAGGAGTATAAAAAACTTCTGGAACTCAACATAAAGGCAGAACCTCAAGAACTTGACCTTAAAGCTGAAAATGACCATGATTATTATGAGGCTTATGAAGACTACAATTTTAACCCAGATATTTCAAAAATAGAGATTGAAGAGAGGAGCTTTGCTTGTTCTAAATGCAAGAAACAGTTTATGAATGAGAAGAAATTATTAAAACACTTACAAAGTCACAGTAATATACCTCTAGAATGTACGATTTGTAAAAAGTCATATCAGAACACAGCCTCATTTAAAAAACACATGGCAAAGCACGGCAACGTTAATAAATGTATGATTTGTAAAAAAACTTTTAGTAGTGATACACTTCTAGTAGAACATATGGTAACACACAGCAATGATGTAGAAGTAAAAACAGAGAAATTGGAGAATCATGAAGCAGAGAAGAATTCCCAGTGTAACATTTGTGGGGTTACCTTTACAAAGCAAAGATCACTTTCTATGCACATGAGGAAGCACCGAAATAAGGTTCAAACACAGTTTATATGTGACACATGTGGAAAGAGCTTTACAATGAAACATTTGTTGAAGCGGCATTTGTTGATGCATAACGATGTTAAGTCACACAAGTGTCCAAAATGTTCTAAAACATACGCCAGACGTGACCAGTTTATGTTACACATGTACGCACATAAGAAGAACAAGCCTTACATTTGTTCATATTGCAAAAAAAGTTTCGCCCAAATGTGCAGTTTGAAGGACCATGTACGCAGTCACACAGGAGAGACGCCATTTTTATGTTCAGAGTGTGGTAAAGGGTTCAAAAATAATTCTAACCTGCGGCAACACATGATGAGGCATACTGGAATCAAGCCCTTTGCCTGTAATATGTGTCCAAAGACGTTTTGCACTAAAGGTCAAATGAAATCCCACTTGACGACACACACTGGTGAACATCCATACAAATGCGAGCAATGCGGGGCTGTCTTCACCAAGCAGAACTCCTTGAGGAAGCACTCCATGATTCACCTCGGAGTGCGCCCCTTCGCCTGCGATACTTACCATTTGAAGCGTCACACGAGGATCCACACGGGAGAGAAACCGTACAAGTGCAAATATTGTGAGAGAGCGTTCTCGCAGAGTAACGACCTCGTGAAACATACGCGCCAACACATTGGACAGAACATATATCAGTGCACAATATGCAGCTCACGGTTTCGGCTGCTATCGGAACTGAAGCAGCACTACCCAGTCCACTTTGCCAACGGAAAAGACGGGGAGTGCGACCCTCAAATGCCCAAAGACCACCAGTCTACCCTCAAAGACTTACTGGAGAAAGACCGTTCCCCATCCAAAGAATATCCAGTGTTGTCGCTGAAACCAGAAGAATACAACCCCTTCAAGAGTGAGAAGGATGTTACTTCCGTTGCTAAGCAACCAGTTCTCAAAGACCTGCCTATATTAGGTCTAAAGCCTCTCTCACCAACATCGGATGTCTTCCAGTCCATTACTGATGATAAATCGCAGATGGACAACAGAATTGTTATCACTATCAACAGCTGTGACACGAATGGTGTTGTTAACGGTATTACTATTAATTTGCCCCCTAAAGAGAGCTAG
Protein Sequence: MLDLTTSCRTCMKDNVTLVDLYENVKIEENCLQLAELLVQCTPTEVSKEDGLPQNLCDDCVKVLQVAYTFRTQAAKAQEEYKKLLELNIKAEPQELDLKAENDHDYYEAYEDYNFNPDISKIEIEERSFACSKCKKQFMNEKKLLKHLQSHSNIPLECTICKKSYQNTASFKKHMAKHGNVNKCMICKKTFSSDTLLVEHMVTHSNDVEVKTEKLENHEAEKNSQCNICGVTFTKQRSLSMHMRKHRNKVQTQFICDTCGKSFTMKHLLKRHLLMHNDVKSHKCPKCSKTYARRDQFMLHMYAHKKNKPYICSYCKKSFAQMCSLKDHVRSHTGETPFLCSECGKGFKNNSNLRQHMMRHTGIKPFACNMCPKTFCTKGQMKSHLTTHTGEHPYKCEQCGAVFTKQNSLRKHSMIHLGVRPFACDTYHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICSSRFRLLSELKQHYPVHFANGKDGECDPQMPKDHQSTLKDLLEKDRSPSKEYPVLSLKPEEYNPFKSEKDVTSVAKQPVLKDLPILGLKPLSPTSDVFQSITDDKSQMDNRIVITINSCDTNGVVNGITINLPPKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00001356;
90% Identity: iTF_00001356;
80% Identity: -