Atri005369.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Abrostola tripartita
Gene Symbol
-
Assembly
GCA_905340225.1
Location
HG996502.1:5727090-5737909[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.3e-05 0.0068 17.1 0.1 3 23 133 153 132 153 0.97
2 17 8.5e-07 6.2e-05 23.5 1.2 1 23 159 181 159 181 0.99
3 17 5.3e-06 0.00039 21.0 2.7 1 23 187 209 187 209 0.99
4 17 3.5e-06 0.00026 21.6 2.6 1 23 224 246 224 246 0.98
5 17 7.9e-05 0.0058 17.3 0.6 1 23 261 283 261 283 0.98
6 17 4.8e-05 0.0035 18.0 3.1 1 23 298 320 298 320 0.98
7 17 3.3e-07 2.5e-05 24.8 1.5 1 23 335 357 335 357 0.99
8 17 0.00015 0.011 16.5 2.8 1 23 363 385 363 385 0.98
9 17 0.00017 0.013 16.3 0.0 1 23 392 414 392 414 0.97
10 17 1.1e-05 0.00077 20.1 2.1 1 23 420 442 420 442 0.99
11 17 0.039 2.9 8.8 1.8 1 23 525 547 525 547 0.98
12 17 2.3e-06 0.00017 22.2 1.5 1 23 553 575 553 575 0.99
13 17 0.00044 0.032 15.0 0.7 1 23 582 604 582 604 0.99
14 17 2.6e-06 0.00019 22.0 1.9 1 23 610 632 610 632 0.98
15 17 0.0019 0.14 13.0 0.3 1 20 638 657 638 660 0.93
16 17 3.6e-05 0.0027 18.4 1.4 2 23 667 688 666 688 0.96
17 17 2.8e-06 0.00021 21.9 1.3 1 23 694 717 694 717 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTTTACACATCTCATCCACACGTACATTCTGGTCCCCCAACAATAGTACGAGCAGATTCAAACCATGCCATCATCAACATGAACCAACATCACCAGACACACGAGGATACTAAAGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAACACCAACAACAACAAGAAATGCAACAACAAGACGATGAGCTGAGCTTCAAAGGTATGGAAGATGAAGGTGTTGAAATGGATATGGATGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCAGTTCAAACTAAAATGGAAGTGTCCAATGGGGGTCAGTCGACACCACGTTCTAAACCTCAGGCCTGTAAGGTCTGTGGCAAGGTTCTGTCGTCTGCTTCATCCTATTATGTCCACATGAAGCTTCATTCAGGAAACAAACCCTTCCAGTGCACTGTATGCGACGCAGCTTTTTGCCGTAAGCCTTACCTAGAGGTGCACATGCGCACCCACACGGGCGAGCGCCCCTTCCAATGCGATCTCTGCCTCAAGCGATTCACGCAGAAGTCCAGTCTTAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAACTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAAACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTCTGGGCCGGCACGGAAAAGTACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTACGTGGGTGGCCGGCGAGCAGCGCGCCGCCGAGCCGGCGCGAGGGACGTATGAACTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCAGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGAGAACGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGCCCTTATGCTTGTGATATTTGTCAGAAGCGTTTCGCCGTCAAGAGTTATGTAACTGCGCACAGATGGTCCCACGTTGCAGACAAGCCGCTGAACTGCGACCGATGTTCGATGACGTTCACCTCTAAGTCACAGTTTGCACTACACATCCGTACGCACTCATCCGGCTCTTGCTACGAGTGCAGCGTCTGTGGTCGCTCCTTCGTCAGAGACAGCTATTTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAATGTGTCGGCGAACAGCATCGGGACCATTAACAGTGTTGCCACCAACACTAACAACTCGAACTTTGACTCTCCTGGCGTTTGTGACTTAAGCTTTGTACCAATGGTGAATCGTTATATGACATCTCAAGGGACGCAAGTGTCTATGCAAGATACGAGCAAAATGTCATCGATGTCGCCACAGTCTATTGCATCCATTTCGTCGCCACCGCCCTCGCATACTCCTACGCCTCAGCCCCAGATGTCCGGTCAGATGCATCTAGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIVRADSNHAIINMNQHHQTHEDTKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKDRPYQCGICFVRFTQKSSLGRHGKVHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTWVAGEQRAAEPARGTYELQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSSGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSSMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00041088;
90% Identity
-
80% Identity
-